KEGG   Novosphingobium decolorationis: HT578_21605
Entry
HT578_21605       CDS       T07993                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K24073  RNA polymerase sigma factor CnrH
Organism
ndr  Novosphingobium decolorationis
Brite
KEGG Orthology (KO) [BR:ndr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ndr03021]
    HT578_21605
Transcription machinery [BR:ndr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HT578_21605
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 PhyR_sigma-like HTH_23 HTH_Tnp_ISL3 HTH_28 DUF134 GerE Xre-like-HTH HTH_17 HTH_1 HTH_30 HTH_10 HTH_AsnC-type HTH_29 KORA HTH_psq
Other DBs
NCBI-ProteinID: QVM86409
LinkDB
Position
unnamed1:36132..36692
AA seq 186 aa
MVETGDSSESDLIAQVKSGGRRAFDRLVEPHAPRLLALARRMLASPSEAEEAVQNALASV
WINRQRLDEGRPVGGYLTTTTLNKCRDRLRRRKAASFLGFGRGLGEIIASDDSPGPEETA
LDRRELARVQSEIERLPVRLREALVLVAIDGRSQREAAELLGVSEKTVETRIYRARNRLR
ESLQYS
NT seq 561 nt   +upstreamnt  +downstreamnt
gtggtggagacaggggacagcagcgaatctgacctgattgctcaggtaaaatcaggcgga
cggcgggcgttcgatcggcttgtcgagcctcacgcgccgcgcctcctcgctctcgcccgg
cggatgctggcatcgccatcggaagccgaggaagccgtgcagaacgcgctggcctcggtc
tggataaatcgccagcgcctggacgaaggtcggccggtcggcggctatctcactacgacc
acgctgaacaagtgccgcgaccgcttgcggcggcgcaaggcggcgagctttcttggattc
ggtcgggggctgggagaaatcatcgcatctgacgactcgcccggccccgaagaaaccgcg
ctggatcgtcgagaactcgcccgtgtacagtccgaaatcgagcgcttgccggttcggctg
cgcgaagcgctggtgcttgttgccatcgatgggcgcagccagcgtgaggcggccgagttg
ctcggcgtgtcggaaaagaccgttgaaacccgcatataccgggcacgcaacaggctgcgc
gaaagtctgcaatattcctga

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