Natator depressus (flatback sea turtle): 141975221
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Entry
141975221 CDS
T11397
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
nds Natator depressus (flatback sea turtle)
Pathway
nds04510
Focal adhesion
nds04512
ECM-receptor interaction
nds04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
nds00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141975221 (COL2A1)
04518 Integrin signaling
141975221 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141975221 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nds00536
]
141975221 (COL2A1)
Glycosaminoglycan binding proteins [BR:
nds00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141975221 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
141975221
NCBI-ProteinID:
XP_074791612
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All DBs
Position
20:complement(4790356..4854422)
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVVLLAAAQVILLAVVRCQEGDIQEAGSCVQDGQRYSDKDVWKPEPCRICVC
DTGTILCDEIICEEMRDCPSPEIPFGECCPICPTDQPAVSGQPGPKGQKGEPGDIKDVVG
PRGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGLPGPPGPPGLGG
NFAAQMAAGFDEKAGGAQLGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGTSG
PMGPRGPPGPPGKPGDDGESGKPGKSGERGSPGPQGARGFPGTPGLPGVKGHRGYPGLDG
SKGEAGAAGAKGEAGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGAPGFPGGPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGAPGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGDPGIAGFKGEQGPKGESGPAG
PQGAPGPAGEEGKRGGRGEPGAAGPVGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPAG
LGGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGASGPPGPSGPAGERGEQG
SPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGSQGLQG
ARGLPGTPGTDGPKGATGPSGPNGAQGPPGLQGMPGERGAAGISGPKGDRGDVGEKGPEG
APGKDGGRGLTGPIGPPGPSGPNGEKGESGPPGPSGAAGARGAPGDRGEPGAPGPAGFAG
PPGADGQPGAKGEQGESGQKGDAGAPGPQGSSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPPGASGKDGPKGARGDAGPPGRAGDPGLQGTAGPPGEKG
ESGEDGPPGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRG
PPGPVGPPGLTGPSGEPGREGTPGSDGPPGRDGAAGVKGDRGETGAVGSPGAPGPPGSSG
PVGPTGKQGDRGESGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTG
LQGLPGPPGTSGDQGATGPSGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQVEKGPDPMRYMRADQASSDLRQHDVEVDA
TLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNM
ETGETCVYPNPSSIPKKNWWTSKTKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQMTF
LRLLSTEGSQNITYHCKNSIAYMDEASGNLKKAILIQGSNDVEIRAEGNSRFTYSALADG
CSKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgtggtgctgctggcagccgcccaggtcatttta
ctagccgttgtcagatgtcaggaaggggatatccaggaggcaggcagctgtgtgcaggat
gggcagaggtatagtgataaagatgtgtggaaacccgagccctgccggatctgtgtctgt
gacactgggactatcctctgcgacgagataatctgcgaagaaatgagagactgtcccagc
cccgagatccccttcggagaatgctgccctatctgcccaactgaccaacctgctgtcagc
gggcaacctggccccaagggacaaaaaggggaacccggtgatattaaagatgtcgtagga
ccaagaggaccacctggaccacagggacctgcaggggaacaaggaccaaggggcgaccgt
ggggataaaggcgaaaaaggtgctcctggccctcggggtagagatggcgaacctggtacc
cctggaaaccccggacccccagggctcccgggtcccccagggccccctgggcttggcgga
aactttgctgctcagatggcggcaggattcgatgagaaggctggtggcgctcagttgggt
gtgatgcagggacctatgggacctatgggaccgcgaggacctccaggaccatcgggagct
cctggccctcaaggatttcaaggcaaccctggagagcctggggaacctggaacttctggt
ccaatgggtccccgagggcctcccggaccacctggaaaacccggtgacgatggcgaatca
ggcaaacccggcaaatctggtgaacgcggatcccctggccctcagggggctcgaggcttc
ccaggaaccccaggtctcccaggagtcaaaggtcacagaggttatcctgggttagacggc
tccaaaggagaagcaggagctgcaggtgctaagggtgaagctggatcacctggtgagaat
ggttctcctggtcccatggggccccgtggtctcccaggtgaaagaggacgtcctggccca
tctggtgctgctggtgctcgtggcaatgacggtctccctggcccagctggcccccctgga
cccgtcggcccctccggagctcctggattccctggcggcccaggctctaagggggaagct
ggtcccactggtgctcgtggccctgagggcgctcaaggccccagaggtgaatctggcact
cccggctcccccggaccttcaggggcacccggtaaccctggaactgacggcatccctggc
gctaaaggatcagctggtgctcctggaattgccggtgcccccgggttccctgggccacgt
gggcctcccgggcctcaaggtgcaactgggcctctgggtcccaaaggtcagacgggagac
cctggcattgcaggcttcaaaggcgaacaaggccccaaaggtgaatcgggccccgcaggg
ccacagggagcacccggcccggctggcgaagaaggcaagagaggtggccgtggtgagccc
ggtgctgctgggcctgttggaccccccggagagagaggctctcctggaaaccgtggcttc
ccaggtcaggatggtctcgctgggcccaagggtgcccctggcgagcgtggtcctgctggc
cttgggggccctaaaggagccactggtgatcctggacgtcccggagaacccggcctgcct
ggcgcgaggggtctcactgggcgccctggtgatgctggtcctcaaggcaaagtcggtcct
tctggtgcccctggtgaggacggtcgccctggcccgccaggcccacaaggtgctcgcggg
cagcctggcgtcatgggtttcccagggccaaaaggtgctaacggcgaggctggtaaagct
ggagagaagggattgcccggcgctcctggtctgagaggtcttcctggcaaagatggtgag
acaggagcttccggcccccccggaccttccgggcctgctggagagaggggtgagcagggc
tcgccaggtccttctggcttccagggactccccggccccccaggtcctccaggcgaaggt
ggcaagccaggagatcagggcgtccctggcgaagctggcaccccaggcctcgtgggtccc
cgaggtgaacgcggcttcccaggtgaacgtggctctccaggttcacaaggtctgcagggt
gctcgagggctccctggaactcctggtaccgatggacccaagggtgcgactggtccatcc
ggccctaatggtgcccaaggtccccctggtctgcaagggatgcccggtgagaggggagca
gctggtatttctggaccaaagggagacaggggtgatgtcggcgagaaaggcccagaaggc
gctcccggcaaggacggcggaagaggtttgacaggtccgatcggcccccctggcccttct
ggccccaacggcgagaagggtgaatcgggtcccccaggcccatctggtgctgccggcgcc
cgcggtgccccgggtgatcgtggtgagcctggagcccctggccctgctggatttgctgga
cctcccggcgctgacggccaacccggcgctaaaggtgaacaaggagaatctggccagaag
ggagacgctggggccccgggtccacagggttcttccggtgctcctggtccacagggtccc
actggtgtgactggtcctaaaggagctcgaggtgcgcagggaccccctggagccaccgga
ttccccggcgctgcaggacgtgtcggccctcccggccctaacggtaacccaggccccgct
ggcccaccaggtgcttctggcaaagatggtcccaagggcgctcgtggtgatgcgggccca
ccgggccgtgctggtgaccctggtctccaaggcactgccggtcctcctggtgagaaggga
gagtccggggaagatggcccacctggggccgatgggccacccggtcctcaaggtttggca
ggccagcgaggtattgtcggtcttcccggccagcgtggtgagagaggtttcccggggctg
ccgggtccctccggtgagcctggcaaacaaggagcccctggaggtgccggcgaccgtggg
ccacctggtcctgtgggccccccaggtctgactggtccctctggtgaacctgggcgcgag
ggcacccccggatctgatggcccccctggcagagatggcgcagctggagtgaagggtgat
cgcggtgaaactggtgctgtcggttctccaggtgctcctggccctcctggctcctcaggt
ccggttggtccaactggcaaacagggagacagaggagaatctggcgctcaaggccccatg
ggtccctccggacccgcaggcgcacgtggcatgccgggtcctcaaggtcctcgtggtgac
aagggcgaagctggagaggctggtgagagaggtctgaagggtcaccgaggattcactggt
ctgcagggtcttcctggacctcccggtacatctggagatcaaggtgctactggtccttct
ggtccttctggtcccaggggtcccccaggccctgttggtccctctggcaaagatggttca
aatggcatgcctggtccgattggtcctccaggtcctcgtggtcgtagtggcgaaaccgga
cctgctggtccccctggaaaccctggaccccctggacctcctggccccccaggccctggc
attgacatgtcggccttcgccggtttgggccaggttgagaaaggccctgaccctatgcgc
tacatgcgagctgaccaggcctctagcgacctgcgccagcatgatgttgaggtcgacgcc
actctgaaatccctcaacaaccagatcgaaagcatccgcagccccgagggctccaagaag
aacccagcccggacctgccgtgaccttaaactctgccaccctgagtggaagagcggtgac
tactggatcgaccctaaccagggctgtaccttggatgccattaaggttttctgtaacatg
gagactggagagacatgcgtctatcccaacccctccagcattcccaagaagaactggtgg
accagcaagaccaaggagaagaagcatatctggtttggagagaccatcaatggtggattc
cactttagctatggagatgacaacctggcccctaacactgctaacatccagatgaccttc
ctgcgcctcctgtccaccgaaggctcccagaacatcacctatcactgcaagaacagcatt
gcctacatggacgaggcttccggcaacctgaagaaagccatcctgatacagggatccaat
gacgtcgagatcagagctgagggcaacagcagattcacatacagtgccttggcggatggc
tgctcgaaacacactggcaaatggggcaagacagtcattgaataccgatcacagaagacc
tcgcgcctgcccatcatcgatattgcccctatggacattggtggggccgatcaggagttt
ggcgttgacgttgggccagtctgctttttgtaa
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