Natator depressus (flatback sea turtle): 141976618
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Entry
141976618 CDS
T11397
Symbol
SYMPK
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
nds Natator depressus (flatback sea turtle)
Pathway
nds03015
mRNA surveillance pathway
nds04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
nds00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141976618 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
141976618 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nds03021
]
141976618 (SYMPK)
03019 Messenger RNA biogenesis [BR:
nds03019
]
141976618 (SYMPK)
Transcription machinery [BR:
nds03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141976618 (SYMPK)
Messenger RNA biogenesis [BR:
nds03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
141976618 (SYMPK)
U7-dependent histone pre-mRNA processing factors
141976618 (SYMPK)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
PDS5
Cnd1
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
141976618
NCBI-ProteinID:
XP_074793784
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All DBs
Position
23:complement(5614195..5634576)
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AA seq
1288 aa
AA seq
DB search
MASRAGEGGNARMSIASQFFTQEEGSGTDSMTTSERVVDLLNQAALISNDSKINLLKQVQ
ELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLK
DENVNVVKKAILAMTQLYKVALQWMVKSKVINDLQEACWEMVSAMASDIILLLDSDNDGI
RTHAIKFVEGLIITLSPRMPDSDVPKRHENDISLDRIPKDHPYIKHNVLWEEGKAALEQL
LKFMVHPAISSINLTAALGSLASIARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRK
NLKLHLLSVLKHPSSFEFQAQITTLLVDLGTQQAEITRSMPSLKEPRKRPRDESDPALKK
MKMEPPLGEDDEDKDLEQAAAPPPKPSAQTSTHSDTDITAEFLQPLLTPDNVANLVLISM
VYLPDTMPASFQATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGSSPRPPGVEHTKLL
KEEPKEEKLVKPESVLIKRRLSSLSQGQAISVLGAQGCVTILLEQEAPQAKRRPEPIIPA
TQTRLAGAGGRKKVFRLSDAIKPLTDVQMEKLKLGAVKRILCSERAVACSGAAQARVKIL
SSLVTQFDVPLKSEVLAFILDDIRNRLDLAFAWLYQEYNAYLSTFPAGSLDSYDECLIGL
LSGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSR
QFQYLHVLLDLSSHEKDKVRQQAILFIKRMYEKDQLREYVEKFALNYLQLLVHPNPPSVL
FGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELASVYTEAIADIKRTVLRVIEQ
PIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVR
FLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSAVSPLNPGELLIAL
HNIDSTKCDMKSIIKATNLCFGERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMY
PRLGGFVMNVLSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLNAVFEKCP
ELREPLLAHVRSFTPHQQAHVPNSTMAILEASSKQEVEVKDSQPLEEEELEPAPLLPRMS
QDMIALRLAQEKALKRQLEEEQKLKQPASQPRPAHALAPLPAEEPMDFREEGPEVETPTI
FISMQEEEEGSGGDGSLLDSSMEGPLPVKEAKSKEAGASSAADEGAESKPESLTPDEPAP
GGPQAVSQPEELPEPGGGGAEQEQKAES
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggccagccgcgcaggggagggcggcaatgcccgcatgagcatcgcctcccagttcttc
acccaggaggagggcagcggcactgacagcatgaccacctcggagcgggtggtggatctg
ttaaaccaagctgccctgatcagcaacgactctaaaatcaacctcctcaaacaggtccag
gagctaattataaacaaggaccccacgctgctggataacttcctggatgagatcatcgcc
ttccaggcggacaaatccatcgaggtgcggaagtttgtcatcggcttcatagaagaggcc
tgcaaacgggatatcgagctgctcctgaagctcatcgccaacctgaacatgctgctgaag
gacgagaacgtcaacgtggtgaagaaggccatcctcgccatgacccagctctacaaggtg
gcgctgcagtggatggtgaagtccaaggtcatcaacgacctgcaggaggcctgctgggag
atggtgtcggccatggccagcgacatcatcctgctgctggactcggacaacgacggcatc
cgcacccacgccatcaagttcgtggaggggctgatcatcacgctgtcgccccgcatgccc
gactcggatgtgcccaagcgccacgagaacgacatcagcctcgaccgcatccccaaggac
cacccctatatcaaacacaatgtgttgtgggaggagggcaaggcggccctggagcagctg
ctgaagttcatggtgcacccagccatctccagcatcaacctcacggcggcgctgggctcc
ctggcctccattgcccgccagcggcccatgttcatggctgaagtgatccaggcctatgag
accctgcatgccaacctgccgccgacactggctaaatcccaggtgagcagcgtgcgcaag
aacctgaagctgcacctgctgagcgtgctgaagcacccctcgtccttcgagttccaggcg
cagatcaccaccctgctggtggacctgggcacccagcaggccgagatcacccgcagcatg
cccagcctgaaggagccgcgcaagcgcccacgggacgagagcgacccagccctgaagaag
atgaagatggagccacccctcggggaggacgatgaggataaggatctggagcaagcagct
gcgccaccacccaagccttctgcccagaccagcacccattcggacacggacatcacggcc
gagttcctgcagcccctgctgacgccggacaatgtggccaatctggtgctgatcagcatg
gtgtacctgcccgacaccatgcccgcctccttccaagccacctacacccccgtggagtcg
gctggcacagatgcccagatcaagcatctcgcccgcctgatggccacccagatgacggct
gcagggcttgggccaggctcctctccccgtcccccaggcgtggaacacaccaagctgctg
aaggaggagccgaaggaggagaagctggtgaagcccgagagcgtgctgatcaaacggcgc
ctgtcctcgctgtctcaggggcaggccatctccgtgctgggggcgcagggctgcgtcacc
atcctcctggagcaagaggccccccaggccaagcggcgcccagagcccatcatcccggcc
acccagaccaggctggcgggcgccggcgggcgcaagaaggttttccgcctgagcgacgcg
atcaagccactgacagatgtgcagatggagaagctgaagctgggagccgtgaagcggatc
ctgtgctcggagagagccgtcgcttgcagtggggcggcccaggcccgtgtcaagatcctc
tcatccctggtgacccagtttgacgtgcccctgaagagcgaggtcttggccttcatcctg
gacgacatccgcaaccggctggacctggcctttgcctggctgtaccaggagtacaatgcc
tacctgagcacgttccccgctggctccctggacagctacgacgagtgcctcattggcctg
ctctctggcctgcaggagaaaccagaccagaaggatgggatcttcaccaaggtggtgctg
gaagccccactcatcacagagagcgccctggaggtgatccgcaagtactgcgaggatgag
agccgcacctacctggggatgtccaccctccgggacctgatcttcaagcgtccgtccagg
cagttccagtatctgcacgtgctgctggacctcagctcccatgagaaggacaaggtccgc
cagcaggcgatcctcttcatcaagcgcatgtacgagaaggaccagctgcgggaatacgtg
gagaagtttgcactgaactacctacagctcctggtgcacccgaaccccccatctgtgctc
ttcggcgccgacaaggacacggaggtggctgctccctggaccgaggagaccgtcaagcag
tgtctgtacctgtacctggccctgctgccgcagaaccacaagctgatccatgagctggcg
tcggtctacacagaggccatcgctgacatcaagcgcaccgtgctgcgggtcatcgagcag
ccgatccgcgggatggggatgaactccccggagctgctgctgctggtggagaactgcccc
aaaggggctgagaccctggtgacccgctgcctgcacagcctgacagataaagtgccccca
tctcccgagctggtgaagcgagttcgcgatctctaccacaagcggctcccggacgtccgg
ttcctcatccccgtcctcaacgggctggagaagaaagaggtgatccaggctctgcccaag
ctcatcaagctgaaccccatcgtggtgaaggaggtgttcaaccgcctcttggggacgcag
cacggcgaagggaattcggccgtgtcccccctgaaccctggggagctgctcatcgccttg
cacaacatcgactccaccaagtgcgacatgaaatccatcatcaaagccaccaacctgtgt
ttcggcgagaggaacgtctacacgtcggaggtgctggccgtggtgatgcagcagctgatg
gagcagagccccctgcccatgctgctcatgaggacggtcatccagtcgctcaccatgtac
ccacgcctgggtggcttcgtcatgaacgtcctgtcccgcctcatcatgaagcaggtgtgg
aagtaccccaaagtgtgggagggcttcatcaaatgctgccagcgcaccaagccccagtcc
ttccaggtcatcctgcagctccctccgcagcagctcaacgccgtcttcgagaagtgcccc
gagctgcgggaacccctgctggcccatgtccgctccttcactccgcaccagcaagcgcat
gtccccaactccaccatggccatcctggaagccagcagcaagcaggaggtggaggtgaag
gactcccagccgctggaggaggaggagctggaacccgcgcccctcctcccacgcatgtcc
caggacatgatcgctctgcggctggcccaggagaaggcactcaaacgccagctggaggag
gagcagaaactgaagcagccagccagccagccgcgccctgcccatgccctggcaccgctg
cctgctgaggagcctatggactttcgggaggaggggcccgaggtggagacgcccaccatc
ttcattagtatgcaggaggaagaggagggttcaggcggagatgggtccctgttggactcc
agcatggaggggcccctacctgtgaaggaagcgaagagcaaggaggcgggagccagcagc
gccgcggacgagggagcggagagcaagcccgagagcctcacgcccgacgagccggcaccc
ggcgggccccaggcggtcagccagcctgaggagctgccagagcccggcggtggcggcgcg
gagcaggagcagaaagcagagagctga
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integrated database retrieval system
