Natator depressus (flatback sea turtle): 141977438
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Entry
141977438 CDS
T11397
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
nds Natator depressus (flatback sea turtle)
Pathway
nds03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nds00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141977438 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nds03019
]
141977438 (SMG5)
03032 DNA replication proteins [BR:
nds03032
]
141977438 (SMG5)
Messenger RNA biogenesis [BR:
nds03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
141977438 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
141977438 (SMG5)
DNA replication proteins [BR:
nds03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
141977438 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
141977438
NCBI-ProteinID:
XP_074795026
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Position
24:complement(5471166..5515877)
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AA seq
1052 aa
AA seq
DB search
MSQGSGTPGESGEPEAKVLHTKRLYRAVVEAVHRLDLILGNKAAYQEVFKPENISLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLIAGI
GFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMEWAQMACHRCLVYLG
DLARYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCI
QSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRCKDIKRLLVSFMYLQSLLQ
PKSSSVDSELTSLCQSVLEDFNLCLFYLPSPPNLNSASEDEEEYECGYSFLPDLLIFRMV
IICLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTD
DQETREPLNSVEKEADADLANHRPSDEQRKKDNKKSKKYSRLSCLRRRRHPQKVDESDLS
EGFDSDSSQDFTKGSDGSESGSEKSDEEVETAFDVETDSDMNSQESRSDLEDMEDEPGEE
GCGRTKSMKNGAKEALKNCMEGSGLVDSKSLSVSKTENSDAAVNGPGSMGTNEASIASNL
QAMSTQLFQTKRCFRLAPTFSNVLLKPTHESAALKQVVDSKPCVNGDVEKPGFPEQDDLS
DSEESITSNKSCRNERSLQEKLEIITNEGLLPTVKVFLDWLRTNTDLIIMCAQSSQSLWN
RLSVLLNLLPSAGELKEPGLALGNEVKDLLIGCELPDLSTSLLLPEDVALRNLPPLKNAH
KRFNFEQDRPILSAVEESVIRICCIRSFGHFITHLQGSILQFNSEVGIFISIAQSEQDNL
LHQAQAQFRMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQAL
CQHLNIIRQLATSGRFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQK
DVGKNFERHKLKRQDLDAWNLYKILDSCKQLTVSQGNGEDDTTGMVTIITGFQPDDPSKF
SAPMQSAIQAAASASVEIKNVLEFYKQWKEMG
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggcagcgggacccccggcgagagcggcgagcccgaggccaaggtgctgcac
accaagcggctgtaccgagcggtggtggaggcagttcatagactggatctcattctcggt
aacaaggcagcttatcaagaagtgttcaagccagagaacatcagcttgaggaacaagttg
cgagagttgtgtgtgaagctgatgttcttgcacccggtggattatgggagaaaagcagag
gaactgctgtggagaaaggtttactatgaagttatccagctcatcaaaacgaataaaaag
cacattcacagccgcagcaccctggagtgtgcataccggactcacctaatcgctggcata
gggttttaccaacaccttcttctctacattcagtctcactatcaactggagctgcagtgc
tgtattgactggactcacgtaaccgacccactgataggctgcaagaaacctgtgtctgca
tcggggaaagaaatggagtgggcacagatggcgtgtcacagatgtctggtttatctggga
gatttagctcgctatcagaatgagttggcaggtgtggacactgaactgttggctgagagg
ttttactatcaagccctttctgttgcaccacaaattgggatgccctttaaccagctgggg
acactggcagggagtaaatattacaacgtggaagctacctactgctatttacgctgtatc
cagtctgaagtgtcctttgaaggtgcgtatggtaacctgaagcggctgtatgacaaggca
gccaaaatgtatcaccagctgaagaaatgtgaaaccaggaaactgtcgccaagcaaaaaa
cgatgcaaagatattaaaaggttgctggtgagctttatgtacctccagagccttttgcag
ccaaaaagcagctctgtggactctgagctaacatctctttgccagtcggtgctggaggat
ttcaacctttgcttgttctacctgccttctcctcctaatctgaactcagcaagcgaagat
gaagaggaatatgagtgtggatattccttccttcccgacctcctcatcttccgcatggtg
atcatctgcctaatgagcgtccacagcctcaaacgggcaggttcaaagcagtacagtgca
gccattgctttcactctggccctcttttctcatctgataaaccacgtcaatattcgcctg
caggcagaactggaggaaggggagaatccagttccagcgttccagagcgacggcacagat
gaccaagagacccgggagcccttgaactccgttgagaaggaagcagatgctgacttagcc
aaccaccggcccagcgatgagcagaggaagaaggacaacaagaagagcaagaaatactcc
cgtctctcctgcttgcgccgccggcgccatccccagaaggtcgatgagagtgacctgagc
gagggcttcgactctgactccagccaggacttcactaagggcagcgatggctcggagagt
ggctcggagaaaagcgacgaggaggtggagacagcctttgatgtggagacagactcagac
atgaacagccaggaatcccgttccgacctggaggatatggaggacgagccaggggaggag
ggatgcggccgaaccaaaagcatgaaaaacggggccaaggaggccttaaaaaactgcatg
gaggggagcgggctggtggactctaaaagcctgagtgtctccaagactgagaattcagat
gctgcagtcaatgggccagggtccatgggcactaatgaagctagcatagccagtaacctc
caggccatgtccacacagctgttccagaccaaacgctgctttcgcttggcccccaccttc
agcaacgtcctcttgaaaccaactcatgaatcagctgccttgaagcaggtagtggacagc
aagccttgtgtcaatggggatgtggagaagcccggcttccctgagcaagatgacttgtcc
gactctgaagagagcatcaccagtaacaaatcctgtcggaacgagagatccctccaagag
aaactagagatcataaccaatgagggcctgcttccgactgtcaaggtgttcctggactgg
ttgagaaccaacactgacctcatcatcatgtgtgcccagagctcccagagtctatggaac
agactgtccgtgcttctgaaccttctgccttctgctggagaactgaaggaaccagggctg
gctcttggtaatgaggtcaaggacttgctgattggctgtgagcttccagacttgagcacc
agcttgctgcttccagaagacgtggcgctccgtaacctgccccctctgaaaaatgcacac
aagaggtttaactttgagcaggacagacccatactctcagcggtggaggagtccgtgatt
cgtatttgctgcatccgcagctttggccacttcatcacccacttgcaaggcagcatcctg
cagtttaattcggaggtcgggatcttcattagcatcgctcagtctgagcaggacaacttg
ctgcatcaggcccaggcccagttccgcatggctgcggaggaagctcgtcggaacaggtta
atgagagacatggctcagctccgactgcagctggaggtttctcagctggaggggagtctc
caacagcccaaagctcagtctgccatgtctccttatcttgtcccagacacccaagctctc
tgccagcacctcaacatcatccggcagttagctaccagcggcaggttcatcatcatcatc
cctcgaacagtgattgatggtttagacttcctgaaaaaggagaatgcaggcgctcgcgac
agcatccgatatttagaggcagaatttaaaaagggaaacaggtacattcgttgccagaaa
gatgttgggaaaaactttgagaggcataaactgaagagacaggatttagatgcctggaac
ctctataaaatattggacagctgcaaacagctgactgtgtcccaaggaaacggagaggat
gacaccacagggatggttaccatcataactggctttcagccggatgatccaagcaaattc
tctgcacccatgcagtctgctatccaggcagcagccagtgccagtgtggaaataaaaaac
gttctagagttctacaagcagtggaaggagatgggctga
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