Natator depressus (flatback sea turtle): 141978893
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Entry
141978893 CDS
T11397
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nds Natator depressus (flatback sea turtle)
Brite
KEGG Orthology (KO) [BR:
nds00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nds03016
]
141978893 (RTCB)
Enzymes [BR:
nds01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
141978893 (RTCB)
Transfer RNA biogenesis [BR:
nds03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
141978893 (RTCB)
Prokaryotic type
tRNA splicing ligases
141978893 (RTCB)
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
141978893
NCBI-ProteinID:
XP_074797343
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Position
1:complement(251538879..251554399)
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AA seq
505 aa
AA seq
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MSRSYNDELQYLDKLNKNSWRIRKGFVPNMNVEGVFYVNEPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSNPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtatctggacaagctcaacaagaacagctgg
aggatcaggaagggcttcgtgcccaacatgaatgtggaaggagtgttttatgtaaatgag
ccgctagagaaattaatgtttgaggagttacgaaatgcctgcagaggtggtggtgctggt
ggattcttgcctgccatgaaacagattgggaatgtggctgcactacctggcattattcat
agatctattgggcttcctgatgtacattctggctatgggtttgccattggtaacatggca
gcatttgacatgagtaacccagaggcagtggtgtcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgattgctgcgtacgaacctggatgaaagtgacgtccagcccgtgaag
gaacagctcgcccaggccatgtttgaccatattccagttggggtgggctccaagggtgtc
atccccatgaacgccaaggacttggaggaggccctggagatgggtgtggactggtctctc
cgggaaggctatgcctgggcggaggacaaggagcactgtgaggagtatggaaggatgctg
caggctgatcccaataaggtctcctcaagagctaagaaaagaggtttgcctcagctgggg
accctgggagcaggaaaccattatgctgagatccaggtggtggatgacatttataatgag
tatgctgccaggaagatgggcattgatcacaagggacaggtgtgtgtaatgatccacagc
ggcagcagaggcctgggccatcaagtagctacagatgctttagtggctatggagaaagcc
atgaaacgggacaagatcatagttaatgatcgccagttggcatgcgccagaattgcctcc
ccagagggacaggactacctaaagggaatggcagcggctgggaactatgcatgggtcaac
cgctcttccatgactttcctaaccagacaggcctttgctaaagtcttcaacacaacccct
gatgacctagatcttcatgtgatctatgatgtgtctcataacatcgccaaagtggagcag
catgtggtggatggaaaagagcggaccctgctggtgcacagaaagggatcaaccagggct
ttccctcctcatcatcctctcattgctgtcgattaccaactgactggacagccagtactg
attggcggaacaatgggaacctgcagctatgttcttactggtaccgaacaaggcatgacc
gagacctttggaaccacgtgccatggagctggtcgtgcattgtcccgggccaaatctcga
cgaaacttggacttccaggatgtgttggacaagctggctgacatggggatcgccatccgt
gttgcttcccccaagctagtcatggaagaagcaccagaatcctataagaatgtgacagat
gtggttaacacctgccatgctgctggcatcagcaagaaagctattaaattgagacctatc
gctgttattaaaggctag
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