Natator depressus (flatback sea turtle): 141979005
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Entry
141979005 CDS
T11397
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nds Natator depressus (flatback sea turtle)
Pathway
nds03020
RNA polymerase
nds03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nds00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
141979005
09124 Replication and repair
03420 Nucleotide excision repair
141979005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nds03021
]
141979005
03400 DNA repair and recombination proteins [BR:
nds03400
]
141979005
Enzymes [BR:
nds01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
141979005
Transcription machinery [BR:
nds03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
141979005
DNA repair and recombination proteins [BR:
nds03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
141979005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
141979005
NCBI-ProteinID:
XP_074797554
LinkDB
All DBs
Position
28:2194568..2216401
Genome browser
AA seq
1971 aa
AA seq
DB search
MHGGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIEKTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQTDGDEDLTKEKGH
GGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMEPK
YARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADVVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNSDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHPC
AMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGE
SVEFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNELEREFEKM
REDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINARLPSDLHPIKVVEGVKELSKK
LXIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQA
IAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSL
TVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEM
PDFDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRI
RIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKK
IIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALE
RELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVL
MEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGVGVPT
GMFFGSAPSPMGGMSPAMTPWNLGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP
GYSPAWSPTPGSPGSPGPSSPYVPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTS
PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP
TSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPK
YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPT
SPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atgcacggggggccgccctccggggacagcgcgtgcccgctgcgcaccatcaagcgcgtg
cagttcggtatcctcagccccgatgagatgaaacggatgtcagtgacggagggggggatc
aagtaccccgagacgacggaggggggccgccccaagctggggggtttgatggatccccgg
caaggagtgatcgagaagacgggccggtgccagacgtgtgcggggaacatgaccgagtgc
ccgggccactttggccacatcgagttggccaagcccgtcttccacgtgggcttcttgggg
aagaccatgaaggtgctgcgttgtgtctgcttcttctgctccaagctgctggtggactcg
aacaacccgaagatcaaggacatcctgggcaagtcgaaggggcagcccaagaagcgcctg
acccacgtctatgacctctgcaaaggcaagaacatctgcgagggcggggaggagatggac
aacaagttcggggtggagcagacagatggcgacgaggacctgaccaaggagaagggtcat
ggcggctgcgggcggtaccagccccgcatccggcgcaccgggctggagctctacgctgag
tggaaacacgtcaacgaggactcgcaggagaagaaaatcttgctcagcccggagcgggtg
cacgagatcttcaagcgcatctcggacgaggagtgtttcatcctgggcatggagcccaag
tacgcccggcccgaatggatgatctgcaccgtcctgcccgtgcccccgctctccgtccgg
cctgctgtggtcatgcagggctcagccaggaaccaggacgatctgacccacaagctggcg
gatgtggtgaagatcaacaaccagctgcggcgcaatgagcagaatggggcggccgcccac
gtcatcgccgaggacgtcaagctgctgcagttccacgtggccaccatggtggacaacgag
ctgcccggcctgccccgggctatgcagaaatcggggcgtcccctcaagtccctgaagcag
cggctgaaagggaaagaggggcgcgtgcgggggaacctcatggggaagcgggtggatttc
tccgcccggacggtcatcaccccggaccccaacctctccatcgaccaggtgggggtaccc
cgctccatcgcggccaacatgaccttcgctgagatcgtcacgcccttcaacatagacagg
ctccaggagctggtacgcagaggtaacagccagtacccgggggccaagtacatcatccga
gacaacagcgaccgcatcgacctgcgcttccaccccaagcccagtgacctccacctgcag
atcggctacaaggtggagcggcacatgtgtgacggagacatcgtgatcttcaaccggcag
cccacgctgcacaagatgtccatgatggggcaccgggtgcgaatcctgccctggtccact
ttccgcctcaacctcagcgtgaccaccccctacaacgctgactttgacggggacgagatg
aacctgcacctgccccagtcgctggagacgcgggcggagatccaggagttggccatggtg
ccccgcatgatcgtcaccccccagtccaaccggcctgtcatgggcatcgtgcaggacacc
ctcacggccgtccgcaagttcaccaagcgagacgtcttcctggagcggggcgaggtgatg
aacctgctgatgttcctgtccacctgggacggcaaggtgccccagccggccatcctcaaa
ccccgcccgctctggacgggcaaacagatcttctccctcatcatcccgggccacatcaac
tgcatccgcacgcacagcacccaccccgatgacgaggacagcgggccctacaagcacatc
tcgcccggtgacaccaaggtgatcgtggagaacggggagctgatcatgggcatcctgtgt
aagaaatcgctcggcacctcggcaggctccctggtgcacatctcctatctggagatgggg
cacgacaccacccgcctcttttatagcaacatccagactgtcatcaacaactggctgctc
atcgagggtcacaccatcggcattggggactccatcgctgacgcaaagacataccaggat
attcagaacaccatcaagaaagccaagcaggatgtcatagaggtgattgagaaggctcac
aacaacgagctggagcccacgccgggcaacacgctgcggcagaccttcgagaaccaggtg
aaccgcatcctgaacgatgcccgcgacaagaccggctcctccgcccagaagtccctgtcc
gagtacaacaacttcaaatccatggtggtgtcgggggccaagggctccaagatcaacatt
tcgcaggtcattgccgtggtgggccagcagaacgtggaggggaagcgcatcccattcggg
ttcaagcaccggacgctgccccacttcatcaaggacgactacggccccgagagccggggc
ttcgtggagaactcttacctggccggcctgacgcccaccgagttcttcttccacccatgc
gccatgggtgggcgcgagggcctcatcgacacagctgtcaagacagcagagactgggtac
atccagcggcggctgatcaaatccatggagtcggtgatggtgaaatacgatgccaccgta
cgcaactccatcaaccaggtggtgcagctgcggtacggggaggacgggctggccggggag
agcgtcgagttccagaacctggccaccctcaagccctccaacaaggccttcgagaagaag
ttcaagtttgattacaccaacgagcgggcgctgcggcgcaccctgcaggaggagatggtg
aaggacatcctgagcaatgcgcacatccagaacgagctggagagggagttcgagaagatg
cgcgaggaccgcgaggtgctacgggtcatcttccccaccggcgacagcaaggtggtcttg
ccctgcaacttgcttcgcatgatctggaacgcccagaagatcttccacatcaacgcgcgc
ctgccctccgacctgcaccccatcaaggtggtggaaggcgtgaaggagctgagcaagaag
ctgnggatcgtgaacggggacgacccgctgagccggcaggcccaggaaaacgccaccctc
ctcttcaacatccacctgcgctccaccctctgcagccggcgcatggtggaggagttccgg
ctcagcggggaggccttcgactggctgctgggcgagatcgagtccaagttcaaccaggcc
atcgctcacccgggcgagatggtgggcgccctggcggcccagtcgctgggcgagcccgcc
acccagatgaccctgaacaccttccactacgccggcgtctcggccaaaaacgtcacgctg
ggcgtgccccgcctcaaggagctcatcaacatctccaagaaacccaagacgccctccctc
accgtcttcctgctggggcagtccgcccgggacgccgagcgggccaaggatatcctgtgc
cggctggagcacacgacactgcgcaaggtgacggccaacacggccatctactacgacccc
aacccgcagagcacggtggtggcggaagaccaggagtgggtcaacgtctactacgagatg
cccgacttcgacgtgagccgcatctcgccctggctgctgcgcgtcgagctcgaccgcaag
cacatgaccgaccgcaagctcaccatggagcagatcgccgagaagatcaacgccggcttc
ggggatgacttgaactgcatcttcaatgacgacaacgcggagaagctggtgctgcggatc
cgcatcatgaacagcgacgagaacaagatgcaggaggaggaggaggtggtggacaagatg
gacgacgacgttttccttcgctgcatcgagtccaacatgctgacggacatgacgctgcag
ggcatcgagcagatcagcaaggtgtacatgcacctgccccagacggacaacaagaagaag
atcattatcacggaggacggggagttcaaggccctgcaggagtggatcctggagacggac
ggggtcagcctcatgagggtgctgagcgagaaggatgtggaccccgtgcgcaccacgtcc
aatgacatcgtcgagatcttcaccgtgctgggcatcgaggcggtgcgcaaggccctggag
cgggagctttaccacgtcatctccttcgacggctcctacgtcaactaccgccacctggcg
ctgctgtgcgacaccatgacctgccgcgggcacctcatggccatcacccggcacggggtc
aaccgccaggacaccggccccctcatgaagtgctccttcgaggagacggtggacgtgctg
atggaggcggcggcccatggggagagcgaccccatgaagggggtgtcggagaacatcatg
ctggggcagctggcgcccgccggcaccggctgcttcgacctgctgctggacgccgagaag
tgcaaatacggcatggagatccccaccaacatccccgggctgggcgtgggcgtccccacc
ggcatgttcttcggctcggcccccagccccatgggggggatgtcgcctgccatgaccccc
tggaacctgggggccaccccggcctatggagcctggtccccgagtgtcggcagcggcatg
acccccggcgctgccggtttctcccccagcgccgcctccgatgccagtggtttcagcccg
ggctattccccggcatggtcccccacccctggctcgcccggctccccggggccctccagc
ccctacgtcccatcgccaggtggggccatgtctcccagctactccccgacgtcgccggcc
tacgagccccgctcgcccggagggtacacgccccagagccccagctacagccccacgtcc
ccctcgtacagccccacgtccccctcctactctcccaccagccccaactacagcccgacc
agccccagctacagccccacgtcacccagctacagcccgaccagccctagctacagcccc
acgtcgcccagctacagtccaaccagccccagttacagccccactagccctagctacagc
ccgaccagccccagctacagccccacgtcccctagctacagcccaacaagccccagttac
agcccgacgtcgcctagctacagccccactagccctagctacagcccgacgtcgcctagc
tacagccccactagtccaagctacagcccgacgtcccccagctacagtcccacctcgccc
agctacagtccgaccagccccaattacagcccgacgtcccccaactacacccccaccagc
cccagctacagcccgacgtcgcccagctacagccccaccagccccaactatacccccacc
tcgccaaactacagccccacctctcccagctacagcccgacgagtcccagctacagcccg
acatcaccgagctactcgccctccagtccccgctacaccccgcaatcgccaacctacacc
cccagttcgcccagctacagccccagcagccccagctacagcccgaccagccccaagtac
accccgaccagcccctcctacagccccagctcgcctgagtacaccccgacttctcccaag
tacagccccacctcccccaagtacagccccacctcccccaagtacagccccacgtcgccg
acctacagcccaacaacccccaagtacagccccacctcgccaacttactccccgacctcc
cccgtctacaccccaacctcccccaagtactccccgacctcgcccacctacagccccacc
tcgcccaagtacagccccacctcccccacctacagccccacctcgcccaagggctcgacc
tactccccgacttcgcccggctacagccccacctcgccgacctacagcctcaccagcccg
gccatcagccccgacgacagcgacgaagacaactga
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