KEGG   Natator depressus (flatback sea turtle): 141984678
Entry
141984678         CDS       T11397                                 
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
  KO
K08131  collagen type IX alpha
Organism
nds  Natator depressus (flatback sea turtle)
Pathway
nds04510  Focal adhesion
nds04512  ECM-receptor interaction
nds04518  Integrin signaling
nds04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:nds00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    141984678 (COL9A1)
   04518 Integrin signaling
    141984678 (COL9A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    141984678 (COL9A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    141984678 (COL9A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:nds00535]
    141984678 (COL9A1)
Proteoglycans [BR:nds00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   141984678 (COL9A1)
SSDB
Motif
Pfam: Collagen Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 141984678
NCBI-ProteinID: XP_074804021
LinkDB
Position
3:complement(56890883..56995023)
AA seq 921 aa
MKSNWQAPVFLYMCSFLWALVSANVQQQTRFPVTFSSNQKTDLCPPIRTDEDDLPGYDLI
SQFQLDKAASQGVIQRVVGSTALQVAYKLGTNVDFRIPTRFLYPNGLPDEYSFLTTFRMT
GSTLQKSWSIWQVQDSSGKEQVGVKLNSQTKALEFSYKGLDGSVQTATFSHLPFLFDSQW
HKVMVSMEKSNVTLFIDCIMIESLQIKPRGKIDVDGFALLGKLINNPQISIPFEIQWMLI
HCDPLRPQRESCSELPARRWISQTAMERGPPGPQGPPGPPGTPGVPGIDGIDGDRGPNGP
PGPPGPDGEPGKPGASGTPGEPGADGLTGPDGSPGPAGPRGQKGEPGLPGGRGLPGKGKL
GPAGPPGVAGLPGEVGRVGPSGDAGKRGPPGPPGPPGPRGTVGLHEGDPLCPNACAPGRP
GHAGLIGMKGHKGVKGEAGEPGKQGHKGEEGAQGVIGDVGAQGPPGIQGLRGITGIMGAK
GNKGARGLDGDPGPRGLPGGSGDQGQRGLRGETGPKGDRGPQGIRGITGLPGPKGEAGLP
GVDGREGIPGMPGAKGEPGKPGGPGDAGLQGLPGLPGSPGANGVSGPKGNTGAPGIPGLM
GNSGKPGEQGPQGIEGPIGPRGLPGSRGEPGPAGPPGPPGKLGPDGDLGLPGLPGPSGLP
GTKGDRGLVGEPGPKGEQGPAGGEGEPGERGDLGDMGLLGPKGSVGNPGEPGLRGPEGSR
GLPGIEGLRGSPGPRGLQGEQGAPGLPGSQGPAGREPTDQHIKQVCMRVMQEQLAQLAAS
LRRPESGVTGLPGRPGPPGAPGSPGENGFPGQIGPRGLPGLKGPPGEIGFKGPKGEAGEK
GERGFPGRGPKGLPGTTGLPGEPGKPSYGREGRDGERGPPGVAGQPGVPGPPGPAGPPGY
CEPSSCTVQAGQRAGKNVKGP
NT seq 2766 nt   +upstreamnt  +downstreamnt
atgaagagtaactggcaagctcctgttttcttgtacatgtgtagttttttgtgggctctg
gtgtcagccaacgtgcagcagcaaacaaggttcccagtcacgttcagctctaaccaaaag
accgacctctgcccaccaatcaggactgacgaagatgacttgccaggttatgacctgatt
tctcagttccagctagataaagctgcctcccaaggggtcatccagagagtggtgggctcc
acagctttacaggtggcttataaattaggcacaaacgtagacttcaggatcccaaccagg
tttttgtatcccaatggattgcctgatgaatattcctttctaactacatttcggatgacc
ggaagcacacttcagaaaagctggagtatttggcaggtccaggattcgtcaggaaaagaa
caagttggagtgaagcttaatagtcaaacaaaggctcttgagttttcttataaagggctg
gatggaagtgtccagactgcaaccttttcacatttgccttttttgtttgattcccaatgg
cacaaggttatggtcagcatggaaaagagcaatgtcactctttttattgactgcattatg
atagaatccttacagataaagcccaggggcaaaattgacgtggatggctttgctttgctg
ggaaaacttataaataatcctcaaatttcaattccgtttgaaatccagtggatgctgatt
cattgcgaccctctacgaccacaaagagaaagttgcagtgaacttccagccaggagatgg
ataagccagacagccatggagagaggccccccaggtccacaaggccccccagggccacca
gggacaccaggagttcctggcattgatggcatagatggagacagaggtcccaatggcccc
ccaggccctccgggtccggatggcgagccaggcaaaccaggtgcctccgggacgccagga
gagccaggagctgatggactaacaggccctgatggatcgcctggtccagctggaccccga
ggacaaaagggtgaacctggattgcccggaggccgtggacttccaggtaaggggaagctt
ggaccagcaggtccccctggtgtagcaggacttcctggtgaagtaggccgtgttggtcca
tccggtgatgctggaaagagaggtcctccaggcccaccagggcccccaggccccagagga
acagttgggctgcatgaaggagatccactgtgtcccaatgcttgtgcacctggtcgtcca
ggacacgctggcctaataggaatgaagggtcacaaaggagtaaaaggagaggctggtgaa
ccaggaaaacaaggtcataagggtgaggaaggtgcccagggagtcataggtgatgtcgga
gctcaaggccctccagggattcaagggttgagaggcataactggtataatgggagccaaa
gggaacaaaggtgctcgtggccttgatggtgaccctggtccacgagggctccctggtgga
tctggagaccagggacagagaggtctacggggagagacaggtccaaagggtgacaggggt
cctcaaggtattagaggaataactggtctccctgggcctaaaggagaagctggcttacca
ggggttgatggccgggaagggatccctggaatgcctggagcaaagggtgaaccaggaaaa
cctggtggtccaggtgatgcaggacttcaaggactgccaggtttacctggctccccaggt
gcaaatggtgtttctggcccaaagggtaatacaggtgcccctgggataccaggtttgatg
ggaaattctggtaaacctggtgaacaaggaccacaggggatagagggaccaataggacca
aggggtctacctggtagcagaggtgagccaggtcctgctgggcctccaggtccaccaggg
aaactgggtcctgatggggacttaggactaccgggactgccaggtccttcgggcctgcct
ggcaccaaaggtgacaggggattggttggtgagccagggcctaaaggtgaacaaggtcct
gctggaggagaaggagaaccaggagaaaggggtgacctgggtgatatgggattgctgggc
ccaaagggatcagttggtaaccctggtgagcctggccttcgtggacctgaaggaagtcgt
ggactgcctggcatagaagggctacgaggctcacctggacctcgtggtttgcaaggtgaa
caaggtgctccaggtctgcctggcagccagggtccagcaggtagagagccaacagatcag
cacattaaacaggtctgcatgagagtcatgcaagaacagcttgctcagctagcagccagc
cttaggaggcctgaatcaggtgttacaggtcttccaggtcgacctggacctccaggtgct
cccggatctcctggcgaaaatggctttccaggacagattggaccccgtggtttgccaggt
cttaaaggtcctcctggtgagattggttttaaaggtccaaaaggtgaagctggtgaaaag
ggggagagaggatttccaggcagaggacccaaaggcttacctggaacaacaggtcttcca
ggtgaacccggcaaacccagctatggaagggaaggccgtgatggtgaacgaggcccacca
ggagtggctggtcagcctggggtacctggtcctccaggtcctgctggtcctccgggatat
tgtgagccatcatcttgcacagtgcaagctggacagagagctggtaagaacgtgaaaggg
ccatga

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