Natator depressus (flatback sea turtle): 141993149
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Entry
141993149 CDS
T11397
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
nds Natator depressus (flatback sea turtle)
Pathway
nds04382
Cornified envelope formation
nds04510
Focal adhesion
nds04512
ECM-receptor interaction
nds04518
Integrin signaling
nds04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nds00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141993149 (COL4A6)
04518 Integrin signaling
141993149 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141993149 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141993149 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141993149 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nds04147
]
141993149 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
nds00536
]
141993149 (COL4A6)
Exosome [BR:
nds04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
141993149 (COL4A6)
Glycosaminoglycan binding proteins [BR:
nds00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141993149 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
141993149
NCBI-ProteinID:
XP_074818590
LinkDB
All DBs
Position
9:84009366..84195444
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AA seq
1702 aa
AA seq
DB search
MHTGLVVLVAFCLAVELVTGGGKKSYNGPCGGRDCSAGCKCFPEKGARGRPGSIGNQGPI
GVPGFAGPEGLAGPKGERGAVGSPGSAGLKGDKGPMGVPGFQGINGIPGHPGQPGPRGFR
GLDGCNGSIGSPGVSGLDGFPGTQGPPGRFGPKGPKGEPAYAQGGLKGSKGENGLPGLDG
ISGPKGFPGPAGSVGPIGLPGLQGPPGTMGPPGPKGNMGLGFQGEKGAKGDVGLPGPAGP
PPSTGILEFMGFPKGKPGAKGEPGPKGFPGIGGLPGPLGFGGIGEKGEKGIPGLPGGRGF
LGLDGSDGFPGRKGQFGLPGFPGLDGVQGMKGELGEMGPPGPLISLDREDGLVSGLPGDP
GIPGTPGPRGDEGIVGLPGLPGTRGLSALVRGAPGLMGFPGIPGITGEPGDQGRATIGLP
GTPGIGGLPGMPGPPGLPGPAQILNGEPGEPGRPGQRGPPGVLGLKGTKGDPGDCACDGG
VTGAGPKGAPGPLGPPGSPGEPGFKGSSGDPGSVGAQGPRGPPASPGQPGSPGRKGEKGD
PSFARGRGLRGDPGATGARGPSGIPGTPGRDGFPGLPGQPGPPGDVGLGFPGEKGLPGLP
GSKGRRGESGLPGIGFPGPSGVRGPPGDPGMDGFPGQPGLPGPPGDCCCGEKVGKGVLDT
EGGITLPCVVPGGFGAPGPPGIPGRPGPKGRPGFPGIPGQPGLRGSKGQPGIPGSMALPG
APGFPGPRGDQGPQGLPGLDGTDGFPGKMGTPGLSGAKGAPGEVFGAERGALGERGRPGF
PGDKGLAGEPGFPGQKGVDGRPGLPGFKGERGNPGLPGIDGLRGPPGAGGPFGIKGEPGP
RGAVGFSGSPGLRGVKGPTGDAGPPGPAGMKGFPGLEGFPGPPGDRGFPGSPGPLGRDGR
PGFFGAKGEKGPPGLIGFPGMPGLPGIPGVSGLKGIPGSAGREGNTGYSGPSGLKGDRGD
RGPPGLPVLRPPELALAFKGDKGDRGSAGLRGFPGPRGDKGFPGPRGQPGLPGPRGPPTA
DRGLPGDAGFPGLPGPPGLPGQKGQAGIIGLPGFPGESGSEGISGAPGFPGTVGFPGPKG
DPGESLGISGGLGDKGEQGDRGFPGERGKDGPKGEPGYPGSTGLDGPKGVPGDLGQEGPP
GLPGIAGLRGNAGLPGSPGQPGPVGFIGLPGIAGPKGFPGFPGLNGLNGLPGTKGSPGTP
GLSEAGLNGPAGLPGPKGEEGSPGIGLGAPGLPGQKGSSGDMGPPGTLGLPGLPGPPGIS
LPSNIPGRRGDPGRPGVDGNPGPPGPPGPRGLSGPASNQGDTGLPGLPGVPGLPGIKGDV
GLPGPTGIPGASGLKGVKAEPGFMGMPGKDGLPGDPGIPGLKGETGRRGFPGLPGAPGLV
PKPEEVIVPPGLPGLPGIDGVPGYAGDRGFQGPDGQQGPKGLSGRSGQVGRPGLPGPDGT
VGDPGTPGIPGPPGLEGVSGKPGLFGLPGMPGRSVGVGYTLVKHSQSEQIPPCPIGMNKL
WEGYSLLYVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNIYEVCYYASRNDKSYWLSTTA
PIPMMPVSRLEIPQYISHCSVCEAPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMHTAA
GAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVERTQQFVGAPPS
ETLKAGQLRTRVSRCQVCMKNL
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgcacacagggcttgttgttctggttgctttctgcctagctgtggaactggtgactggg
ggtgggaagaaatcctataacggaccatgtgggggtcgagattgcagcgcaggctgcaaa
tgttttccagagaaaggtgctcggggtcgaccgggatctattgggaaccaaggacctata
ggtgttccaggatttgctgggccagaaggtttggcagggccaaaaggtgagagaggggca
gtgggctctccaggatcagctggactgaaaggagataagggtccaatgggagtgcctgga
tttcaaggcatcaatgggattccgggccaccctggccagccagggcccagaggttttcgt
ggccttgatggctgcaatggttctattgggagtcctggtgtttccgggttggatgggttt
cctggtacacaggggccacctggtcgctttggtcccaaaggtcccaaaggagaacctgcg
tatgcccaaggtggccttaaaggaagtaagggtgaaaatggtcttcctggattggatggg
atttctggtccaaaaggtttccctggcccagcaggttctgtgggtcctataggattgcca
ggtttgcaggggccaccgggtacaatggggccaccaggaccaaaaggtaacatgggatta
ggtttccaaggagagaaaggtgcaaagggagatgtcgggctacctggccctgcaggtccc
ccaccatccactgggatactagagttcatgggatttccaaaagggaaaccaggagcaaag
ggtgagccaggccctaaaggattccctgggattggaggattacctggccctctgggcttt
gggggtatcggagaaaaaggagaaaaggggatccctggcttaccaggtggcaggggattt
ctgggattggatggatctgatgggtttccagggagaaagggtcagtttggtcttcctggt
tttcctgggctggatggagtgcaaggaatgaagggtgaattaggtgaaatgggtcctcca
ggccctcttatttctctcgatagagaagatggactcgtctcaggtttgccaggagatccc
gggattccagggactccaggccctcgaggagatgaagggattgttggtttaccaggcctt
cctggcacccgaggtctctcagctcttgttcgaggggcaccaggtctcatgggatttcca
ggtattccaggtattactggtgaaccaggagaccaagggagagcaacaattggattacca
ggcactccaggcataggtggtttaccgggtatgccaggacctccaggactgcctggtcca
gcacaaatcctcaatggagaacctggggaaccaggaagacctggacaacgggggccacca
ggagttttgggactaaaagggaccaaaggggatccaggtgattgtgcttgtgatggagga
gtcacaggagctggaccaaaaggtgcaccaggccctctgggtccaccaggaagccctggt
gaacctgggtttaagggttctagtggagatcctggcagtgtgggtgcacaagggccgcga
gggcctccggcttcacctggtcaaccaggttctccaggccgtaagggagaaaaaggagat
ccatcttttgcaagaggcagaggtctccgtggggatcctggtgcaacaggagccagaggg
ccttctggcatcccaggaactcctggcagagatggattcccaggtttaccaggccaacca
ggtcctccgggtgatgttggactaggctttccaggcgaaaaaggcctgccaggattacct
ggctccaagggccggcgtggggagagcggtcttcctggcattggtttcccaggtcctagt
ggagttcgcggccctccaggtgacccaggaatggatggttttccaggacaaccaggtctt
ccaggtcctccaggtgactgctgctgcggtgagaaggttggtaaaggagtcttagacaca
gagggagggatcaccttgccctgtgtagttcctggagggtttggtgcccctgggcctcca
ggcataccaggacgtccaggtcccaagggcagaccggggtttccaggcattccaggtcaa
cctggattacgtggatcaaaaggacaaccaggtattccaggatcaatggcattgccagga
gcaccaggctttcctgggcctcgtggagatcagggaccacaagggcttccaggacttgat
ggaacagatggtttccctggaaagatgggaacgcctggcttgtcaggggcaaaaggagct
cctggtgaagtgtttggtgctgaaagaggagccctgggtgagcgtggcagacctggattc
ccaggagataaaggacttgctggagaacctggatttcctggacagaagggtgttgatgga
aggcctggcttaccgggttttaaaggcgaacggggtaatccagggctcccaggtattgat
ggattgcgaggacctcctggtgctggaggtccgtttggcattaaaggagaaccaggtccc
aggggagcagttggcttctcaggatcaccaggacttcgtggagtcaaaggaccaactggt
gatgcaggtccaccaggccctgctggtatgaaaggcttcccaggtctagaaggttttcca
ggaccacctggggacagaggattcccagggtcacctgggcctttgggtagagatggacgt
ccaggtttctttggagcaaaaggtgaaaagggtcctcctgggttgattggctttcctggc
atgccaggcctgcctggtatccctggggtgagtgggctgaaaggaattcctgggtcagct
ggaagggaaggaaatactggatattctggaccctctggtctaaaaggtgacaggggtgat
cgaggtccacctggactcccggttcttaggcctccagaattggccttggcattcaaggga
gacaaaggtgatcgtgggtcagctggactgagaggattccctggacctagaggtgataaa
ggattccctggaccccgtggacaacctggtcttcctggtccacgaggaccgccaaccgca
gatagaggacttcctggtgatgcagggttcccaggcctgcctggaccacccggtttgcca
ggacagaaaggacaggctggaatcataggattacccggatttccaggagaaagtggttca
gagggtatctcaggagcaccagggttcccaggaactgttggtttccccggtccaaagggt
gacccgggggaatcacttggaatttctggtgggttaggagataaaggagaacaaggggac
cgtggattcccaggtgagagggggaaagatgggccaaagggtgaaccaggatacccagga
agcactggcctggatgggcctaaaggtgtcccaggtgaccttggccaagaaggaccacca
ggcctccctggaattgctgggttgcgaggaaatgcaggtctaccgggttctccagggcag
cctggacctgtaggattcatcggactccctgggatagcagggccaaaaggattccctgga
tttcctggtttaaatggtctgaacggcttaccaggcacaaaagggtcacctggaacacca
ggtctgagtgaagctggactgaatggccctgcagggcttccaggtcctaagggtgaagaa
ggttccccaggcattggcctaggagccccaggactccctgggcagaaaggatcatcagga
gacatgggtcctccaggtaccttgggtctgcctggtttaccagggcctcctggcatctct
cttccttcaaatatacctgggagacgtggtgatcctggccgtcctggagtggatgggaat
ccaggccccccaggtcctccaggtcctcgagggctctccggcccagcctccaatcaaggt
gataccggccttccaggtttacctggagttcctggtttgccaggcataaagggtgacgta
ggactccctggtccaactggaattccaggagcttcgggactcaaaggtgtgaaggctgag
ccaggctttatggggatgccaggtaaagatgggcttccaggggaccctggaattcctggg
ctgaaaggtgaaactggccgtcgaggtttcccgggcctaccaggcgctccaggcctagta
ccaaaaccagaagaagtcatagttcctccagggctacctggtctgccaggaattgatggg
gtcccgggctatgctggagatcgtggatttcagggaccagatgggcagcaaggtccaaaa
ggtctgtcaggcagatcaggtcaggtgggccgtcctggtttaccggggccagatggcaca
gttggggatccaggaaccccaggtattccagggccaccaggattggaaggtgtctctgga
aagccaggcctgtttggtttgcccggaatgccgggtcggagtgtaggcgttggatacact
ttggtgaagcacagccagtcagagcagatcccaccgtgcccaattggaatgaataagctc
tgggagggttacagcttgctgtatgtggaggggcaggaaaaggcgcacaaccaggatcta
ggttttgctggctcctgcttgcctcgcttcagcaccatgccatttatttactgcaacatc
tatgaggtgtgctactatgccagccgaaatgacaaatcctactggctctccaccactgct
cccatccccatgatgccagtgagccgtctggagatcccacagtacatcagtcattgctca
gtgtgtgaagcaccttcccaggctattgcagtacatagccaggacattaccatcccgcag
tgccccgagggctggcgcagcctgtggatcggatactctttcctaatgcacactgcagct
ggcgcggaaggcggaggtcagtcccttgtctcacccggctcttgcctcgaggatttccgt
gctactcctttcattgaatgcaatggtgccagaggaacctgccattactttgcaaacaaa
tacagcttctggctgaccacagtcgaacgcacgcagcagtttgtcggtgctcctccctca
gaaactctgaaagcaggacagctccgaacacgagtcagccgttgccaagtgtgcatgaag
aacttgtag
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