Natator depressus (flatback sea turtle): 141996243
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Entry
141996243 CDS
T11397
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
nds Natator depressus (flatback sea turtle)
Brite
KEGG Orthology (KO) [BR:
nds00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nds04147
]
141996243 (COL18A1)
00535 Proteoglycans [BR:
nds00535
]
141996243 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
nds00536
]
141996243 (COL18A1)
Exosome [BR:
nds04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
141996243 (COL18A1)
Proteoglycans [BR:
nds00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
141996243 (COL18A1)
Glycosaminoglycan binding proteins [BR:
nds00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141996243 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
141996243
NCBI-ProteinID:
XP_074824302
LinkDB
All DBs
Position
11:77456283..77682620
Genome browser
AA seq
1875 aa
AA seq
DB search
MAPAEQRLCLLLLLTCCCSLVETQFFDWLWGSQKAPTVTTLPPTESPATEGQTAEPLTSP
VATTTRAAVPATVQPGDQVWSTLAVTRPAPATDTAVPAPASPSLSQDQGENIAGVGAEIL
DVAEGIRSLVQLWDEGTTRRTGNAGEPTAAAPRTTTRTSLAAPSSATGLAGHGNMTANST
GDGHGLLGTGQPEASLPMPTGPPPAWNRTRALLRKPAAAPPGSASFPFSPGRGTRGEMGA
SQEYLSAEGQESATLPQARAGGGVASEKRGGVSPTASALDWREPQTDLSVHAGIPAQLAG
SLDNCLSHYVAHSNQSLSYGNSTRRSLKNNSSQSVQSTDPSTMHFGIAVADLNRNHNDAV
SNTNATNSVDFFSANNSEFLEFDLLTYTMQLYDNGSAGLASFFPGLILTAGRCLPFPADL
PYCNNLGIKHFRLPNYFHHGSDVEIRAALHEWEGLLTSRCHRYLEWFFCMLLVPGCNASI
PITPPPCWGFCEAVRDLCWIHLKEGRLPISCDSLPAEDAGYSCVFVNVSAEHFSTEVSLL
QLIGDPPPEQITKVNGPDNTLAYVFGPDANTGQVARYHLPSPFYRDFSLLFHVQPTTDKA
GVLFAITDASQTVIYVGVKLSTVQDRKQQIIFYYTEPGSESSYAAATFSVPSLVNEWTRF
AIGVEDDEVVLYLNCEEFRRVRFERSPDEMELEDGSGLFVGQAGGADPDKYQGVIADLKV
TGDRQAADLQCEEQDEDSDVASGDFGSGVEERPHLSGRERGTPAVSRLPEPPPVTSPPTA
GETVEKVSVGSQLQTKQIQVEGPQQVSTAARVGPKGEKGAPGERGERGPKGDSGTGGVLA
AGSTKGDKGEKGDLGVKGSAGFGYPGLKGQKGEPGAQGSPGPAGPPGPPGSTVQRLDGSV
VEQVTGPPGPTGPPGLPGEDGLPGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLKGQKG
EPGVGARGPPGLPGPPGTPGLSSKQDKLTFIDMEGSGFGGDLESFRGPRGPPGPPGPPGV
PGLPGEPGRFGMNSTELQGPPGLPGRAGVPGAKGLPGPAGPPGENGSAGQPGLRGERGDP
GDLGLPGAPGPKGSKGEMGLVGTPGETGLAGLPGPMGPRGPPGPPGPAGPPGPGYEVGFG
DMEGSGMPFFSTFPGERGPEGLQGPPGIPGLKGDTGSPGLPGLPGQKGDHGAPGVDGRPG
LEGFPGPQGPKGDKGIQGAKGERGQDGVGSPGPPGLPGPPGQVIYASGEEKALAGLPGPE
GRQGQAGFPGPVGPKGDSGEPGFPGTPGPKGEKGEPGAIISPDGTGISAGTKGDKGEQGL
VGPMGPAGRHGQPGQKGEIGFPGRPGRPSMNGLKGEKGDPGGLGLQGPPGLPGPPGAPGS
VVSVYDNNAFSESGLPGPPGLPGYQGAPGQKGERGDTGAPGPPGQFPYDLNEFGSTFRGE
KGDRGDPGLKGEKGESGGGGLYGPSVTGPPGPQGYPGLPGPKGDSIRGLPGPPGPQGPPG
IGYEGRQGPPGPPGPPGPPSFPGPHRQTVSIPGPPGPPGPPGPPGTSGSLTSSGLRILPS
YQSMLSTAQEVPEGWLVFTQDREELYVRVRSGFRRVRLEEHTSISSPGLDNEVYDKPPSV
HYSHGGTASSGFLHPRREHNPSATARPWRADDSIANHHRLPDHSPHSAQPQQELLDSFPP
RRRGESAPSAGHTHHDFQPALHLVALNAPLSGSMRGIRGADFQCFQQARAVGLTGTFRAF
LSSRLQDLYSIVRRADRSGVPIVNLRDEVLFNNWEALFSGTEAQFRAGAHILSFDGRDVL
RDSAWPQKNVWHGSDAKGHRLTESYCETWRTDNSVVTGQASSLASGKLLEQKVSSCQNAF
IVLCIENSFMTSSKK
NT seq
5628 nt
NT seq
+upstream
nt +downstream
nt
atggctccagctgagcagcgtctgtgtctcctgctcttgctaacctgctgctgctccttg
gtggagacacaattttttgactggctctgggggagccaaaaagcccccacggtaacgacc
ctgccccccacagagagccccgctacggagggacagacggcggaaccgcttacctctcct
gtggccaccacgacacgggcggctgtgccggcgaccgtgcagccaggggaccaggtatgg
agcacgctcgcggtcacgcggccggcaccagccacagacaccgctgtccccgctccggca
tcaccttccctgtcccaggaccagggggagaacattgcgggggtgggggctgagatcctg
gacgtagcagagggcatcaggagcctggtccagctatgggatgaggggaccacccggagg
actggaaacgcaggggagcccacagccgctgcgcctcggacaaccactcgcaccagcctg
gctgctcccagctctgcaacggggctggctggccatgggaacatgactgccaactcgaca
ggggatggccacggcctgctggggactgggcagccagaggcttcgcttcccatgccaaca
ggccctccgcctgcctggaacaggacacgggcgctcttacggaagcctgcggcagctcct
ccaggtagtgcttctttcccgttttcaccaggtagaggcacccgtggcgagatgggggct
tcccaggaatacctctctgcagagggtcaggaaagtgctaccctcccacaagcaagggct
ggcgggggagtggcctcagaaaagagaggaggagtttcaccgacagcaagcgctctggac
tggcgggagccgcagaccgatctcagcgtgcatgctgggattccagcccagctggcaggt
tctttagacaactgcctatcccattatgttgcacattcaaaccaatcgctctcttacggg
aatagtacccggcgcagccttaaaaataacagcagccaatcagtgcaaagcactgaccct
tccacaatgcattttgggatagcagtggctgatttaaataggaaccataatgatgctgtt
tctaatacaaatgcaactaattctgtggattttttttctgccaataattctgaatttctt
gagtttgatttactaacctacactatgcaactttatgacaacggtagcgcagggcttgct
tccttctttcctggattgattcttacagcgggtcgctgcttgcccttcccagccgatctg
ccgtattgcaacaacctgggcataaagcatttcagattaccgaattatttccatcatggc
agtgacgtggaaattcgggctgctttgcatgagtgggaggggcttcttacatctcggtgc
caccgctacctggaatggtttttctgcatgctgctggtccctgggtgcaatgcttctatt
ccgataacacccccaccgtgctgggggttctgtgaggctgtgagagatctgtgctggatt
catttgaaagaggggcgcctcccaatatcatgtgactctctccctgcagaggatgctggg
tattcttgtgtgtttgtaaatgtgtctgcagaacatttcagcacagaagtgagtcttttg
cagctgattggagatcccccaccggagcaaataaccaaagtcaatggccccgacaacact
ctcgcctatgtcttcgggccggatgccaacaccggtcaagtggcccggtaccacctgcct
agccccttttatagagacttctcgctccttttccacgttcagcccaccaccgacaaggct
ggcgtgctctttgccatcacagatgcctcgcagacggtcatctacgtcggagtgaagctc
tccaccgtgcaggacaggaagcaacagatcatcttctactacacggagccgggctccgag
agctcgtatgcagctgcaactttctctgtgccttccctggtgaacgagtggactcgcttt
gccatcggcgtggaggatgacgaggtggttctgtacctgaactgtgaggagtttcgccgg
gttcgctttgagcgctctcccgatgagatggaactggaggatgggtctgggctctttgtg
ggtcaggctggaggggctgatccagataaataccagggggtgattgcagatctgaaagtg
acaggtgatcgccaagcagctgatctccagtgtgaggaacaggacgaggattcggatgtg
gcgtctggagattttggaagtggagttgaagaaaggccccacctatcaggaagggagcgg
gggaccccggctgtgtcgcggctcccggaacctcccccggtcacgtctccccccaccgct
ggggagacagtggagaaagtgagcgtgggctctcagctgcaaaccaagcaaatccaagtg
gaaggaccccagcaagtttctacagcagccagggttggtccaaaaggtgaaaagggggcc
ccgggagagagaggtgaacgtggcccaaagggggactctggaaccggcggggttctagca
gccggcagcaccaaaggcgacaagggggaaaaaggagacctgggcgttaagggaagtgca
ggatttgggtatcccggcttgaaggggcagaaaggggagccaggtgcccagggatctccc
ggccccgctggcccacctgggccccctggctctacagtgcagcgcctggacggctctgtg
gtggagcaggtcactgggcctccaggaccaacaggccccccagggctgcccggggaagac
ggcctccctggcaaggatggagagcccggtgatcctggtgaagacgggaaacctggtgac
gttgggccccagggattccctggaactcccggagagcctggcctcaaggggcagaagggt
gagcccggagtcggtgcaagaggaccccctggactgcccggaccgcccgggacaccgggc
ctctcttccaaacaggacaagctgacgttcatcgacatggaaggctctgggtttggaggc
gatctggaaagcttccggggcccccgaggcccaccagggccccccggacctcctggggtg
cccggcctgccaggagagccaggaagatttgggatgaacagcactgagctgcagggaccc
cccggcctgccaggcagagctggcgtccccggagccaaaggcctaccaggtcctgcgggt
cctccaggagaaaatgggtctgccggccagcctgggcttcgaggagaacggggggaccca
ggtgacctaggcctccccggagctcctggacccaagggcagtaagggcgagatggggctg
gtgggaaccccaggagaaaccgggctggcaggccttcctggacctatgggaccacgagga
ccaccaggtcccccaggccctgctggacctcctgggccaggctacgaggttggatttggc
gacatggaaggctcggggatgcctttcttttctacctttcctggagaacgcggacccgaa
gggctgcaggggccaccaggaatccccggactcaagggggacactggcagccctgggctg
cctggcttgccaggacaaaagggggaccacggggctccaggcgtggatgggcgcccaggg
ctggaaggtttcccaggacctcagggacccaaaggtgacaagggcatccagggggctaag
ggtgaacgaggccaagatggagtgggctccccaggcccccctgggctccctggacccccg
gggcaggtcatctatgcgtcgggtgaagagaaagcgttagctggtttaccaggccctgag
ggcagacaaggccaagctggcttcccgggcccagtgggacctaaaggagactcaggagag
ccaggtttcccaggcactccaggaccaaagggtgagaaaggagagcctggagcgatcatc
agcccagatgggacgggcatctcagccggcacgaaaggagacaagggtgagcaggggctc
gtgggacccatgggcccagcgggccggcatggacaacctggacagaagggggaaatcggc
tttcctggcagaccgggtcgtcccagcatgaacgggctgaagggcgagaagggggacccc
ggagggctcggcttgcagggtcctccgggtctccccgggcccccaggtgcccctggcagt
gtagtgtccgtctacgacaataacgcgtttagtgagtcgggccttcctggccctccagga
ttgcctggctaccagggtgccccaggacaaaagggtgaacgaggcgacacaggtgcccca
gggcccccaggccagttcccctatgatctcaacgaatttggttccaccttccggggtgaa
aaaggagaccggggggaccctggactgaaaggagaaaagggggagtctggcgggggagga
ctgtacggaccaagcgtcactggacctccaggtcctcagggctatcctggccttccgggt
cccaagggggacagcattagaggcctgcctggccccccagggcctcagggaccccctggc
attgggtacgaggggcggcagggcccccctggtccccctgggcctcccgggcccccctcc
tttccaggaccccacagacaaactgtcagcatccctggcccacctgggccgccagggcca
ccaggacctccagggaccagcgggtcgttgacctcctccgggctgcggatcttgccatcg
tatcagtccatgctgagcacggcccaggaggtgcccgagggctggctggtcttcacacag
gacagagaagagctgtacgtccgggtgcggagcggcttccggagagtccggctggaggaa
cacacttccatctccagtccggggctggacaacgaagtgtacgacaagccgccgagtgtc
cactactcgcatggcggcaccgcctcctccggcttcctgcacccgcgccgagagcacaac
ccctccgccacagcccggccctggcgagcggacgacagcatcgccaaccaccaccgcctt
cccgaccactctccccacagtgcccagccccagcaagagctgctggacagcttcccccca
cgccgccggggcgagagcgccccctctgctggtcacacgcaccacgacttccagcccgcc
ctccacctggtggcgctgaacgccccactgagcggcagcatgcgcggcatccggggagcc
gacttccagtgcttccagcaggcccgggcagtcgggctgacgggcacgttccgagccttc
ctgtcctcccggctgcaagacctgtacagcatcgtgcgcagggccgaccggagcggggtg
cccatcgtcaacctccgggatgaagtgctgtttaacaactgggaggcgctgttctcgggc
acggaggctcagttccgagctggcgctcacatcctctcgttcgacggaagagatgtcctg
agagactcagcgtggcctcagaagaacgtgtggcatggctctgacgccaagggccaccgg
ctcacagagagctactgcgagacatggaggacggacaacagcgtggtgacgggccaggcc
tcctcgctggcctcgggcaagctcctggagcagaaggtgagcagctgccagaacgccttc
atcgtcctgtgtatcgagaacagcttcatgacctcttccaaaaagtga
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