Natator depressus (flatback sea turtle): 141996732
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Entry
141996732 CDS
T11397
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
nds Natator depressus (flatback sea turtle)
Pathway
nds03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nds00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141996732 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nds03041
]
141996732 (DHX38)
Enzymes [BR:
nds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141996732 (DHX38)
Spliceosome [BR:
nds03041
]
Complex C
Other components
Step II factors
141996732 (DHX38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
T2SSE
nSTAND_NTPase5
nSTAND3
PhoH
Flavi_DEAD
AAA_30
Microtub_bd
SRP54
Sigma54_activ_2
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
141996732
NCBI-ProteinID:
XP_074825100
LinkDB
All DBs
Position
12:complement(42929735..42956344)
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AA seq
1237 aa
AA seq
DB search
MEDVPEDTSMHRLEGADLETQVGGLIIKKKSACSEQHVFKAPAPRTSLLGLDLLAAQKRR
EREEKEDTEDKKKSKVSSYKDWEESKDDLGSSEEEGSDRASRSSRQDRHYRSAHVETPSH
TGGVSEEFWERSRQRERERREHGVYASSKEEKEHKRGRNRERDHDRKRDREERDRSRHSS
SRSEKDGSSERGSSRRGEPESPRHRPKDAATPSRSSWEEEDSGYSSSRRSQWESPSPTPS
YRDSERDRSHRASSARDADRRDRDRSVKNKYPDETPLPTPSYKYNEWADDRRHLGATPRL
SRGKGRREDAEEGISFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEEYVKK
REQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNTAKVHLLVH
NLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKKAQHKHWEL
AGTKLGDIMGIKKEEEPDQTLTEDGKVDYRTEQKFADHMKEKSEASSEFAKKKSIVEQRQ
YLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAA
MSVAKRVSEEMGVSLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDHYSAII
MDEAHERSLNTDVLFGLLREVVARRADLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFP
VDVLFSKTPQEDYVEAAVKQTLQVHLSGAPGDILIFMPGQEDIEVASEQIVEHLEELEKA
PALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKV
FNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTN
LANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGAMDNTGGLTSTGRLMVEFP
LDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLT
YLNVYLQWKNSSYSMLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGSDWDIVR
KCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYM
QCATSADGEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQ
ERRNPLGSVRSLKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtccctgaggacacttcgatgcaccggctggaaggagctgatctggagaca
caggttggaggcttgatcatcaagaagaaaagtgcctgcagtgagcagcatgtcttcaaa
gctccagccccccgcacctcactgctgggattggacttgctggctgcacagaaacgcagg
gagcgagaggagaaggaagacacagaggacaagaagaagtccaaagtctcctcctacaaa
gattgggaggagtccaaagatgatttgggaagctctgaggaggaggggagcgacagggcc
agcaggagcagccggcaggacaggcattaccgctctgcccacgtggagacgccgtcccac
actgggggggtcagcgaggagttctgggagcgcagccggcagcgggagcgtgaacggcga
gagcatggcgtctatgcctcctccaaggaggagaaggagcacaagcgggggcgcaataga
gagcgggaccacgaccgcaaacgggaccgagaggagcgggacaggagccgtcatagcagc
agccggtcagagaaggatggctcatcagagaggggcagcagcaggaggggtgaaccagag
agccccagacaccgaccgaaggatgcagccacgccatctcgctcgagctgggaggaagag
gacagtggctatagcagctcacggcgctcgcagtgggagtcgccttcccctacgccttcc
tatagggactccgagcgcgaccgcagccatcgagcatcctccgctcgtgatgcagacagg
agggaccgggacaggtcagtgaagaacaagtacccagatgagacaccgctgcccacccct
tcctacaaatacaatgaatgggctgatgaccggcggcacctgggggccactccacggcta
tccaggggcaaagggaggcgtgaagatgcagaagagggtatttcctttgagacggaggag
gagcggcagcagtgggaggacgaccagcggcaagccgaccgggactggtacatgatggac
gagggttacgacgagttccacaaccccttggcctactcatctgaggagtatgtgaagaag
cgggagcagcacttgcacaagcagaagcagaagcgcatctctgcacagcggaggcagatc
aatgaggacaatgagcgctgggagaccaatcgcatgctgacgagcggggtagtccatcgt
ctagaggtggatgaggactttgaggaagataacacagccaaagtgcacctgctggtacac
aacctggtgcccccatttttggatgggaggatcgtcttcactaagcagccagagccagtc
atcccagtcaaggatgccacttcggatttggcaattatcgcccgcaaaggcagccagctg
gtgcgcaaacacagggaacagaaggaacgcaagaaggctcagcacaagcactgggagctg
gctggcaccaaactgggagacattatgggcatcaagaaagaggaggagccggaccagact
ctgacagaagatggcaaggtggattacaggacagagcagaagtttgctgatcacatgaag
gagaagagcgaggccagcagcgagtttgctaagaagaagtcgattgtggagcagaggcag
tatctgcccatctttgctgtgcagcaggagctgctcaccatcatcagggataacagcatt
gtcattgtggtgggggagactgggagtggcaagaccacccagctgacccagtacctacat
gaggacggctacaccgactacggcatgatcggctgcacccagccccgcagagtggctgcc
atgtcagtagccaagcgggtcagcgaggagatgggcgtgagcctgggagaggaggtgggc
tatgccatccgctttgaggactgcacgtccgagaacacggtcatcaagtacatgacggac
gggatcctgctgcgggagtccctgcgcgaggccgacctagaccactacagcgccatcatc
atggatgaggcacacgagcggtcactcaacacggacgtgctcttcggcctgctgcgggag
gtggtggcacgccgtgcggacctgaagctcattgtcacctcggccaccatggacgcagag
aagtttgcctccttctttgggaacgttcccatcttccacattcctggacgcaccttccct
gtcgatgtcctcttcagcaagaccccgcaggaggactacgtggaggctgcggtgaagcag
accctgcaggtgcatctgtctggggcccctggagacatcctcatcttcatgccaggccag
gaggacattgaggtggcctcggagcagatcgtggagcatctggaagaactggaaaaggcc
ccagctctggctgtgctgcccatctactctcagctgccctctgacctgcaggccaagatc
ttccagaaggctccggacggtgtcaggaaatgcattgtcgctaccaacattgcggagacc
tcgctgactgtggatggcatcatgtttgtcatcgactctggctactgcaaactgaaggtc
ttcaacccccgcatagggatggatgccctgcagatctaccccatcagccaagccaatgcc
aaccagaggtcgggtcgtgctggccggacgggcccaggtcagtgcttcaggctgtacacc
cagagcgcctacaagaatgagctgctgaccaccacggtgcctgagatccagcgcaccaac
ctggccaatgtggtgctcctgctcaagtctctgggcgtgcaggacctgctgcagttccac
ttcatggacccgcccccggaggacaacatgctgaactccatgtaccagctgtggatcttg
ggagccatggacaacacaggtggcctgacctcaacggggcgcctgatggtggagttcccg
ctggacccggcgctctccaagatgctcattgtctcctgtgacatgggctgcagctccgag
atcctgctcatcgtctccatgctctctgtgcccgccatcttttaccggcccaagggccgg
gaggaagagagcgaccaggtgcgggagaagtttgctgttccggagagcgatcacctgacc
tacctaaacgtttacttgcagtggaagaacagcagctactccatgctgtggtgtaaccag
cacttcatccacgccaaggccatgaggaaggtgcgggaggtgcgtgcccagctgaaggat
atcatggtgcagcagcgcatgagcctggcatcctgcggctcagactgggacatcgtcagg
aagtgcatctgtgccgcgtacttccaccaggctgccaagctgaagggcatcggggagtat
gtgaacatccgcaccggcatgccctgccacctgcaccccaccagctctctctttggtatg
ggctacactccagactacatcgtgtatcacgagctggtcatgaccaccaaggagtacatg
cagtgtgccacgtccgcggacggagagtggctcgcggagctgggccccatgttctacagc
atcaagcatgcggggaagtcgcgccaggagaaccgacgtcgggccaaggaggaggtgtct
gccatggaggaggagatggctctggctgaagagcagctgcgagcacgccgggaagagcag
gagcgccgcaaccccctgggcagcgtgaggtctttgaagatctatactccgggacgaaag
gagcagggggagcccatgacgccacgccgcactcctgcccgctttggcctgtga
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integrated database retrieval system
