Natator depressus (flatback sea turtle): 141998192
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Entry
141998192 CDS
T11397
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nds Natator depressus (flatback sea turtle)
Pathway
nds03013
Nucleocytoplasmic transport
nds03015
mRNA surveillance pathway
nds03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nds00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141998192 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
141998192 (DDX39B)
03015 mRNA surveillance pathway
141998192 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nds03019
]
141998192 (DDX39B)
03041 Spliceosome [BR:
nds03041
]
141998192 (DDX39B)
Enzymes [BR:
nds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141998192 (DDX39B)
Messenger RNA biogenesis [BR:
nds03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141998192 (DDX39B)
Spliceosome [BR:
nds03041
]
Complex C
Other components
EJC/TREX
141998192 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141998192 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141998192
NCBI-ProteinID:
XP_074826956
LinkDB
All DBs
Position
14:complement(46917957..46923052)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAGGDGVDVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggataacgagctgctggattacgaggatgacgaggtggagaac
caggcggggggcgacggggtggacgtgccccccaagaaggacgtcaagggctcctacgtc
tccatccacagctccggcttccgggactttctgctgaaacccgagctccttcgcgccatc
gtcgactgcggcttcgagcacccctcggaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctgtgccaggccaagtcgggcatgggcaagacggccgtcttcgtg
ctggccacgctgcagcagctggagcccgtcacggggcaggtgtctgtgctggtgatgtgc
cacacgcgggagctggcgttccagatcagcaaggagtacgagcgcttctccaagtacatg
cccagtgtcaaggtggcggtgtttttcgggggcctgtccatcaagaaggacgaggaggtg
ctgaagaagaactgcccccacatcgtggtggggacgccaggccgcatcctggccctggcg
cgcaacaagagcctcaacctcaaacacatcaagcatttcatcctggacgagtgcgacaag
atgctggagcagctcgatatgcgccgggacgtccaggagatcttccgcatgaccccgcac
gaaaagcaggtcatgatgtttagcgccaccctgagcaaggaaatccgccccgtctgccgc
aaattcatgcaagaccccatggagatcttcgtggatgacgagaccaagctgacgctgcac
ggcctgcagcagtactatgtcaagctgaaggacaacgagaagaaccgcaagctcttcgac
ctgctcgacgtgctggagttcaaccaggtggtgatcttcgtcaagtcggtgcagcgctgc
atcgcgctggcccagctgctggtggagcagaacttcccggccatcgccatccaccggggc
atgccccaggaggagaggctgtcccgctaccagcagttcaaggatttccagcgccggatc
ctggtggccaccaatctcttcgggcgggggatggacatcgagcgggtcaacatcgccttc
aactacgacatgcccgaggactcggacacctacctgcaccgggtggcgcgggctgggcgg
ttcggcaccaagggcctggccatcaccttcgtgtcggacgagaacgacgccaagatcctc
aacgacgtgcaggatcgcttcgaggtgaacatcagcgagctgcccgacgagatcgacatc
tcctcctacatcgaacagactcgataa
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