Neobacillus drentensis: L1999_00315
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Entry
L1999_00315 CDS
T08277
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ndt
Neobacillus drentensis
Pathway
ndt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ndt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L1999_00315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndt03400
]
L1999_00315 (mfd)
Enzymes [BR:
ndt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L1999_00315 (mfd)
DNA repair and recombination proteins [BR:
ndt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L1999_00315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_16
UB2H
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ULT57131
LinkDB
All DBs
Position
60481..64017
Genome browser
AA seq
1178 aa
AA seq
DB search
MNGLKSIFLKQEDVHSIIAGIEEGLKEQLVAGLSGSSRTVLTASVYEKMNRPIMLVTHNL
LQAQKLYDDLVNLLSEKEVFLFPANELIAAELSVASPELKAQRIDALNYWSRQNKGVLIV
PIAGLKKIVPPKSLWQQYQLSLKLGEDIDIEKLLNTFVKMGYIRSEMVTTPGEFSVRGGI
IDIYPLTEADPLRIELFDTEIDSIRYFSLDDQRSKEKIQEVLIGPASEIILEAENYSRMI
GKLEEGLALSLRKLKDDKAKMQLSQNLSYELEQLKNGQKPDQVYKYLSLAYERPASLLDY
LPSNGLVFVDEISRVQEMNDSLVKEEAEWYTGLLSEGKIIHDLHISHDLQAMLQRKEFPL
LYMSLFLRHVANTSPQNIINITCKQMQNFHGQMHVLKAEIDRWKKGNYCILFLGADEDRV
QKLERVLEDYEISASMIKGDQSLVPGKVQIMQGNLHAGFELSIQKIAVITEEELFNKRVK
KSTSRQKLSNAERIKSYSELKIGDYVVHVNHGIGKYLGIETLVINGIHKDYLHIRYQGSD
KLYVPVEQIDLVQKYVGSEGKEPKVYKLGGTDWKKVKKKVESSVQDIADDLIKLYAEREA
AVGYAFSPDGDLQREFETSFAYQETEDQLRSIHEIKKDMERSRPMDRLLCGDVGYGKTEV
AIRAAFKSIADGKQVAFLVPTTILAQQHFETLRERFQDYPINIGLLSRFRTKKQQTETIK
GLKAGSVDIVVGTHRLLSKDIIYRDLGLLIVDEEQRFGVTHKEKIKKLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGSLVREAIERELARDGQVFFLYN
RVEDIERKAEEISMLVPDARVTFAHGQMTENELESVMIGFLAGEFDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSTLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDLGGEVKKS
VEIDLEIDAYIPDTYIKDGHQKIEMYKRFRGADSLEEIEELQTEMRDRFGEYPVEVDYLF
QIAEIKVYALLNGVEQIKQVKQEVTILVNEQITGNIDGSKIFHIGSQFGRNIIPGMEGSK
LKIMIKTKEYETAEWLHAVREMVKGIPLAKRGQGNPVN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgaatggtttaaaatcaatatttttaaagcaggaagatgttcactccattattgctggg
attgaagaaggattaaaagaacaactggttgcaggcctttcaggatcatcacgtacagtc
ctaactgcatcagtttatgaaaagatgaacaggccgatcatgcttgttacccataatcta
ctacaggctcaaaagctttatgatgatcttgtcaatctattaagtgaaaaagaagtcttt
ctttttccagcgaatgaattaatagccgccgagctcagcgttgccagcccggaattaaaa
gctcagcgaattgatgcccttaactattggagcagacaaaataaaggggttttaattgtt
ccaattgcgggtctgaaaaagattgttcctcctaaatcgctatggcagcaataccagctg
tcgttaaagctaggagaagacatcgatatcgaaaagttgttaaacacctttgttaaaatg
ggttatatccgctctgaaatggtaacaactccaggggaatttagtgtaaggggcggaatt
attgatatctatcctcttacggaagcggatccactgcggattgaactatttgatacagaa
attgattccatccgttatttctcccttgatgatcagcgatctaaagaaaagattcaagag
gtgttaattggaccagcaagcgaaatcattcttgaagccgaaaactacagccgaatgatt
gggaagcttgaagaaggattagctttgtcattacggaaactaaaagatgataaagcaaag
atgcagcttagtcaaaacctcagctatgagcttgaacagttgaagaacggccaaaagcca
gatcaagtctataaatatttatccttagcctacgagcggcctgctagtttactagactat
ctgccaagtaatggacttgtgtttgtagatgaaattagcagagttcaagagatgaatgat
tcccttgtaaaagaagaagcagagtggtatacagggttactttctgaagggaagattatt
catgacctgcatatttcccatgacttacaggccatgctgcaacgaaaagaatttccgctt
ctctatatgtcattatttttgcgccatgtagccaatacaagcccacaaaatataattaat
attacgtgtaaacaaatgcaaaatttccatggtcaaatgcatgttttaaaagcagaaatt
gacaggtggaaaaaagggaattattgcattttatttttaggtgcggatgaagaccgggta
caaaaattagaacgggttctagaggattatgaaataagtgcgagcatgataaaaggtgac
caatcgctcgtaccaggtaaagttcagatcatgcaaggcaatcttcatgcaggattcgaa
ctctcgattcaaaaaattgctgtcatcaccgaagaagaattatttaataaacgcgtcaaa
aaatcaaccagccggcagaaattatcgaatgctgaacggataaaaagttactccgagtta
aaaattggagactatgttgtgcatgttaatcatggaatcggcaaatatttaggaattgaa
acactcgttattaacggtatccataaagattacctgcatattcgctatcaaggatcagat
aaactttacgtaccagtggaacaaattgacctggttcaaaaatatgtgggatcagaagga
aaagagccaaaggtttataaactcggcggcactgattggaaaaaggttaagaagaaagtt
gaatcatctgtacaagatatcgcagatgacctgattaagctatatgccgagcgggaagca
gcagttggttatgccttttcacctgacggggacctgcagcgtgaatttgaaacttctttt
gcctatcaagaaacagaagatcagctgcgctcgattcatgaaattaaaaaggacatggaa
agatcgcgtccgatggaccgtctcctttgtggtgacgtcggttacggtaaaacagaagtg
gccatccgtgccgcatttaaatcaattgcagacggaaaacaagtagcctttctggtgcca
acaacgattctggcacagcagcactttgagacacttagggagcgttttcaggattatccg
attaatatcggtttattaagccggttccgcacaaaaaaacagcagacagaaacgattaaa
ggcttaaaagcaggttcagttgatattgttgtcggtactcatcgtctgctatcaaaggat
attatctatcgcgatttgggcctattgattgtcgatgaagaacagagatttggtgttaca
cacaaagaaaagatcaagaagttgaaaacaaacgtcgatgtgttaaccttaacggctaca
ccaattccaaggacactccatatgtccatgcttggcgtgcgtgatttatcggtgatcgaa
acaccgccggaaaatcgctttccagtccaaacatatgttatggagtacaatggttcattg
gtaagagaagcaattgaacgtgagcttgccagggacggacaagtattctttttatataac
cgagttgaagatatcgaacgtaaggctgaagaaatttccatgcttgttccagatgcccgc
gtaacgtttgcacatggacaaatgacggagaatgaactggaatctgttatgattggtttc
ttggcaggggaatttgatgtgctcgtgagcacaacgattatcgaaacgggtgttgatatt
ccgaatgtaaatacgttaattgtgttcgatgcagaccgaatgggtctttccacgctttat
cagctccgcggccgggttggcagatccaatcgtgttgcgtatgcctattttacgtaccga
aaggataaggtcttaacggaagtggcagaaaagcgtcttcaggcgattaaggaatttaca
gagttagggtccggatttaagattgcgatgcgggacttatcgattcgcggagcagggaac
ctattaggtgcacagcagcatggatttattgattccgtaggatttgacctttattctcaa
atgctgaaggaagcaattgaagagcggaagggcgaccttggaggcgaggtgaaaaaatcc
gttgaaattgatctggaaatcgatgcttatatcccagatacgtatattaaagatggacat
caaaagattgagatgtataaacggtttagaggagccgatagtcttgaggagattgaagag
ctgcaaacagagatgcgtgatcgttttggcgaatatccggtagaagtcgattatctattc
caaattgctgaaatcaaggtttatgctctgttaaacggggttgagcaaattaaacaagtg
aaacaagaagtcaccatccttgttaatgagcagattaccggcaatattgatggaagtaaa
atattccatataggcagccagtttggcagaaatattattcctgggatggaaggctctaag
ttaaaaatcatgattaagacaaaagagtacgaaacagcagagtggcttcatgctgtccgg
gaaatggtcaaaggaataccattggcgaaaaggggccaaggcaatcctgtgaattaa
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