Neisseria dumasiana: LVJ88_01145
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Entry
LVJ88_01145 CDS
T08094
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ndu
Neisseria dumasiana
Pathway
ndu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ndu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LVJ88_01145 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndu03021
]
LVJ88_01145 (rpoB)
03400 DNA repair and recombination proteins [BR:
ndu03400
]
LVJ88_01145 (rpoB)
Enzymes [BR:
ndu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LVJ88_01145 (rpoB)
Transcription machinery [BR:
ndu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LVJ88_01145 (rpoB)
DNA repair and recombination proteins [BR:
ndu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LVJ88_01145 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
SopD
Motif
Other DBs
NCBI-ProteinID:
UOO84652
LinkDB
All DBs
Position
249529..253707
Genome browser
AA seq
1392 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRANVLDVPFLLATQLDSYSKFLQLGKPFDQRSDDGLQAAFNSI
FPIVSHNGYARLEFVHYVLGEPLFDIPECQLRGITYASPLRARIRLVILDKESSKPTIKE
VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVSILLKALGYNNEQILDTFYDKETFYLSKDG
VQTDLIASRLKGETAKLDIVDKEGNVLVAKGKRITAKNIRDISNAGLKRLDVDPESLLAK
VLATDLIVPDTGEVLATANEEITEELLAKLDIHGVEKVETLYINELDQGGYISNTLRTDE
TADQQAARVAIYRMMRPGEPPTEEAVELLFNRLFFNEDSYDLSRVGRMKFNTRTYEQKLS
DAQADSWYGRLLNQTFAGAAEKGGFVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV
RSVGELVENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ
FMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN
SLSVYARTNEYGFLETPYRRVVDGKVTDEIDYLSAIEEGRYVIAQANAELDSDGRLTGDL
ITCREKGETIMATADRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL
RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRIVVRVHDDEATAGEVGVDIYNL
VKFTRSNQSTNINQRPVVKAGDVLQRGDVVADGASTDLGELALGQNMTIAFMPWNGYNYE
DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI
GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV
FTREGIQRDKRAQSIIDSELKRYRQDLSDQLRIFDNDAFSRIERMIVGQKANGGPLKLAK
GSDITSEYLASLPSKHDWFDIRLADESLAKQLELIKVSLQQKREEADALYEVKKKKLTQG
DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLAEQRKVGEIREFLNKLYNNSGKQENLD
ELSDEEILALAENLKRGATFASPVFDGAKENEIYEMLDLAYPSDDPEVEKLGFNNSKTQI
TLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRF
GEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKMYENIVKGEHKIDAGMPESFNVLVKEI
RSLGLDIDLERY
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgagttattcttttaccgagaaaaagcgtatccgtaagagttttgctaagcgggcaaat
gtattagatgtgccttttttgctggcaacacagctggattcttattcgaaatttttacag
ttgggtaagccttttgatcagcgtagtgatgatggtttgcaagctgcttttaactctatt
tttccaatcgttagccataatggttatgcgcgtttagagtttgtgcattatgttttgggt
gagcctttgtttgatattcccgagtgtcaattaaggggtattacttatgcatctcccctt
cgtgcgcgtattcgtttggttattttggataaagaatcttccaagccgactataaaagaa
gtgcgtgaaaatgaagtttatatgggtgagattcctctgatgacgcccagcggttctttt
gtcattaacggcacagaacgtgtgattgtgtctcagctgcatcgttctccgggtgtgttt
tttgagcatgaccgcggaaaaacacattcatcaggtaagttgttattttctgcccgtatt
atcccttatcgcggttcttggttggattttgagttcgaccctaaagacttgttgtatttc
cgtatcgaccgccgccgtaaaatgccggtatccatcttgttgaaagctttgggttacaac
aacgaacaaattttagataccttttatgacaaagaaacgttttacttgtcgaaagacggt
gttcaaacggatttgatcgcaagccgtctgaaaggtgaaactgcaaagcttgatatagtg
gataaagaaggcaatgtattggttgccaagggcaaacgtattactgccaagaatatccgc
gatatcagtaatgcaggcttgaaacgtttggatgttgatcccgaaagtttgttggccaaa
gtgttggcaacagatttgatcgtgcccgataccggtgaagttttggctacggcaaacgag
gaaattacagaagaattgctggctaagctggatatccacggcgttgaaaaagtggaaacg
ctatacatcaatgaactggatcaaggcggttatatttccaatacgctgcgtaccgacgaa
actgcagatcagcaagctgcccgtgtagcgatttatcgcatgatgcgccccggcgaacca
cctaccgaagaagcggtagagctgttatttaaccgcctgtttttcaatgaagacagctat
gatttatctcgtgtgggtcgtatgaaattcaatacccgcacttatgagcagaagcttagc
gatgctcaggcagattcatggtatggccgtttgttgaaccaaacttttgccggtgcagct
gaaaaaggtggttttgtgttgagcgtggaagacatcgttgcttctattgctactttggtt
gagttgcgtaacggtcatggcgaagtggacgatattgaccatttgggtaaccgtcgtgtc
cgttcggtaggtgaattggtggagaaccagttccgcagcggcttggctcgtgttgagcgg
gcagtgaaagagcgtttgaatcaggcggaatctgaaaatctgatgcctcatgatttgatt
aatgctaagccggtttctgctgcaattaaagagtttttcggttccagccagttgagccaa
tttatggatcagaccaacccgctgtcggaaattacccacaaacgccgtgtgtctgcactg
ggtccgggtggtttgacgcgcgaacgtgcgggctttgaggtacgcgacgtacatccgacc
cactatggccgtgtgtgcccgattgaaacacctgagggtccgaacattggtttgattaac
tcattgtctgtttacgcacgcaccaacgaatacggtttcttagaaaccccataccgtcgt
gtggtggatggcaaggtaaccgatgaaatcgattatttgtctgctatcgaagaaggtcgc
tatgtgattgcacaggcaaacgccgaattggattcagacggccgcttgaccggtgattta
attacctgtcgtgaaaaaggtgaaaccattatggctactgccgaccgcgttcagtatatg
gacgtggcgaccggccaagtggtttctgtggctgcttctttgattcctttcttagagcat
gacgatgcgaaccgtgccttgatgggtgccaatatgcaacgtcaggccgtgccatgcttg
cgcccggaaaaaccgatggtgggtaccggcattgagcgttcggtagccgtggattccgct
actgcaattgttgcccgtcgtggcggtgtggttgagtatgtcgatgctaaccgtatcgtt
gttcgcgtacacgatgatgaagcgactgccggcgaagtgggtgtggatatttacaacttg
gtgaaatttacccgctcaaaccaatcaaccaacattaaccaacgtcctgtggtgaaagcc
ggtgatgtgctgcaacgcggcgacgtcgtggccgatggtgcttctaccgatttaggtgaa
ttggctttgggtcaaaatatgactatcgcctttatgccgtggaacggttacaactatgaa
gactcgattctgatttctgaaaaagtggctgcggatgaccgttatacttctatccatatc
gaagaattgaacgttgtggcacgtgataccaagctgggtgcagaagacattacccgtgat
attccgaacttatccgagcgcatgcaaaaccgtttggacgaatcgggtatcgtttatatc
ggtgcggaagttgaagccggtgacgtgttggtaggtaaagtaacgcctaaaggcgaaacc
cagctgacaccagaagaaaaactgttgcgtgccattttcggtgaaaaagcatcagacgta
aaagatacgtcattgcgtatgcctaccggtatgagcggcacggttatcgatgtgcaggta
tttacccgcgaaggcatccaacgcgacaaacgtgcccagtcgattattgattcggaactg
aaacgctaccgccaagatttgagcgaccaactgcgtattttcgataacgatgccttcagc
cgtatcgagcgcatgattgtcggccagaaagccaacggaggcccgctgaaactggccaaa
ggcagcgacatcacttcagaatatctggcatcgttgccgagcaagcacgattggttcgat
atccgtttggccgacgaatctttggctaagcagctggagttgatcaaagtcagcctgcaa
caaaaacgcgaagaagccgatgccttgtatgaagtgaaaaagaaaaagctgacacagggc
gacgaattgcaacccggcgtacaaaaaatggtgaaagtattcatcgccatcaaacgccgt
ctgcaagccggtgacaaaatggccggccgccacggtaacaaaggtgtggtatcgcgcatt
ctgccggtggaagacatgccttatatggcagatggtcgccccgtagatatcgtattgaac
ccgttgggcgtaccgtcccgtatgaatatcggccagattctcgaagtgcatttgggttgg
gcggcaaaaggtatcggcgagcgcatcgaccgcatgttggccgagcagcgtaaagtaggc
gaaatccgtgagttcctgaataaactctataacaacagcggtaagcaggaaaatctggac
gagctgagcgatgaagaaattttagccttggctgagaatctgaaacgcggagccacattc
gcctcgccggtattcgacggtgctaaagaaaacgaaatctacgagatgctcgacttggct
tatccgagcgacgatcccgaagtagaaaaactcggcttcaacaacagcaaaacccaaatc
accctttacgacggccgttcaggtgaaccgttcgaccgcaaagtaaccgtcggtgtgatg
cactacctgaagctgcaccacttggttgacgagaaaatgcacgcccgttctaccggcccg
tacagtctggttactcagcagccgctgggtggtaaagcccaattcggtggccagcgtttc
ggtgagatggaggtgtgggcactggaagcttacggtgccgcctacacgctgcaagagatg
ctgaccgtgaaatcggatgacgttgccggccgtaccaaaatgtatgaaaacattgttaaa
ggcgagcacaaaatcgatgccggtatgcctgaatccttcaacgtattggttaaagagatt
cgctcattgggcttggatatcgatctggaacgttactaa
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