Neisseria dumasiana: LVJ88_02220
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Entry
LVJ88_02220 CDS
T08094
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ndu
Neisseria dumasiana
Pathway
ndu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ88_02220 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndu03021
]
LVJ88_02220 (rho)
03019 Messenger RNA biogenesis [BR:
ndu03019
]
LVJ88_02220 (rho)
Transcription machinery [BR:
ndu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LVJ88_02220 (rho)
Messenger RNA biogenesis [BR:
ndu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LVJ88_02220 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA
OB_RNB
S1CSD-TOTE-2
AAA_22
NACHT
Motif
Other DBs
NCBI-ProteinID:
UOO84848
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Position
490475..491734
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AA seq
419 aa
AA seq
DB search
MHVSELQTQHISKLLEMAEQHGIENANRLRKQDLVFAIVRQLMKQGQSFTCSGTLEILPD
GFGFLRSSDTSYLAGPDDIYVSPSQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSIN
GDNPEVCKHKILFENLTPLFPTKQLKLERDIKAEENITSRAIDLVSPIGRGQRALLVAPP
KTGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMARSVRGEVVSSTFDEPAARHV
QVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVAPASGKILTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEKRLFPAINI
NKSGTRREELLVPNDQLQRMWLLRKFLHPMDEIEATEFLVGKLKDSKDNNDFFELMRGK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtttctgaactacaaacacaacacatctccaaacttttggaaatggccgagcag
cacggcatcgaaaatgccaaccgcctgcgtaaacaagaccttgtttttgccattgtgcgc
caactgatgaagcagggccaatcatttacctgctccggcacgcttgagattctgcccgac
ggtttcggatttctacgcagttccgatacttcttatttggccggccccgatgatatttac
gtttctcccagccaaatccgccgcttcaacctgcacaccggcgacaccatagaaggcagc
gtgcgcgtacctaaagacaacgaacgttattttgccttggtgcgtttggacagcatcaac
ggcgacaaccctgaagtctgcaaacacaaaattctctttgaaaacttaactccgcttttc
cccaccaaacagctcaaactcgagcgcgacatcaaagccgaagaaaacattaccagccgc
gccatcgatttggtttctcccatcggccgcggccagcgcgccctcctggttgccccgccc
aaaaccggtaaaaccgtgatgctgcaaaacatcgcccatgccgttaccgccaattacccc
gaagtagaattgattgtgctgctgatcgacgaacgccccgaagaagtaaccgaaatggca
cgcagcgtgcgcggcgaagtggtgtcttctacgtttgacgaaccggccgcccgccatgtt
caggtggccgaaatggtgttggaaaaagccaagcgtatggtcgagcataaaaaagacgtg
gtgattctgctcgattcgatcacccgcttggcgcgcgcctacaataccgtggctccggct
tccggcaaaatcctgaccggcggtgtcgatgccaatgcgctgcaccgtccgaaacgcttt
tttggtgccgcgcgcaatgtggaagagggcggttcgctcaccattatcgccacggctttg
gtagaaaccggcagccgtatggacgacgtgatttacgaagaattcaaaggcacgggcaat
atggagctgcacctcgaccgccgcatggccgaaaaacgcctgttccccgccattaacatc
aacaaatccggcacgcgccgcgaagagttgctggtgccgaacgaccagcttcaacgcatg
tggctgctgcgcaaattcctgcatccgatggacgaaatcgaagccaccgagtttttggtc
ggcaagctcaaagattccaaagacaacaacgatttctttgaattgatgcgcggtaaataa
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