Neisseria dumasiana: LVJ88_06355
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Entry
LVJ88_06355 CDS
T08094
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ndu
Neisseria dumasiana
Pathway
ndu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ88_06355 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndu03019
]
LVJ88_06355 (pnp)
03016 Transfer RNA biogenesis [BR:
ndu03016
]
LVJ88_06355 (pnp)
Enzymes [BR:
ndu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LVJ88_06355 (pnp)
Messenger RNA biogenesis [BR:
ndu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LVJ88_06355 (pnp)
Transfer RNA biogenesis [BR:
ndu03016
]
Prokaryotic type
tRNA degradation factors
LVJ88_06355 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
Methyltransf_FA
DUF5813
DUF4057
KH-I_KHDC4-BBP
S1_RRP5
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
UOO83349
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All DBs
Position
1399992..1402127
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AA seq
711 aa
AA seq
DB search
MFNKHVKSFQYGEHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLT
VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV
DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNNVYVLNPTKAQLAKSQMDLVVA
GTQKAVLMVESEAQELPEHVMLGAVVYGHEQMQAVINAINEFADEVNPEVWDWKAPETNE
ELVAKVREISGTTIAEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLTANEIKGIFKQ
LEADVVRGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQ
RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALVAVLPSQE
EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAVLT
DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQMKE
AVEGPQELSQHAPRLFTMKINQDKIRDVIGKGGETIRSITADTGTEINIAEDGTITIAAT
TQEAGDAAKKRIEEITAEVEVGKVYDGTVLKLLDNNVGAIVSVIPGKDGLVHISQIAHER
VKNVSDYLQVGQNVKVKALEVDDRGRVRLSMKALIEAPEREPRQEQPVSGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaacacgttaaatctttccaatacggcgagcacaccgttaccctcgaaacc
ggcgaaatcgcccgccaagccgcggcagccgtgaaagtttctatgggcgacactgtggtt
ttggtggctgttaccgccaataaagacgttaaagaaggtcaagactttttccccttaacc
gttgactatctcgagcgcacttatgctgcgggtaaaatccccggcggtttcttcaaacgc
gaaggcaagcaaagcgaaaaagaaatcctcaccagccgcctgatcgaccgccccatccgc
ccgctgttccccgaaggtttctaccacgacatccaaatcgtagcgatggtggtttcggtt
gaccctgaaatcgattccgacatccccgccatgatcggtgcttctgccgcactggtgttg
agcggcgtgccgtttgccggcccgatcggtgccgcgcgcgtgggttatgtgaacaatgtt
tatgtgttgaacccgaccaaagcgcaactggcgaaatcgcaaatggatttggtggttgcc
ggtacgcaaaaagccgtgctgatggtggaatccgaagcgcaagagctgcccgaacatgtg
atgttgggcgcggtggtgtacggccacgagcaaatgcaggccgtgattaatgccatcaat
gaatttgccgacgaagtcaaccccgaagtgtgggattggaaagcgccggaaaccaacgaa
gaattggtggccaaagttcgtgaaatttccggcaccacgattgccgaagcgttcaaaatc
cgccaaaaacaagcccgttccgccaaattggacgaagcttggaatgcggttaaagatgca
ttgattaccgaagaaaccgacacgctcaccgccaacgaaatcaaaggcattttcaaacaa
ctggaagccgacgtggtgcgcggtcagattttggacggccaaccgcgtatcgacggccgc
gacacccgcaccgtgcgcccgatcaacatccaaaccggcgtattgccgcgcacccacggt
tccgccctgtttacccgcggcgaaacccaagccttggcagtagccactttgggcactcag
cgcgacgagcaaatcattgatgctttgagcggcgaatacaccgaccgcttcatgctgcac
tacaacttcccgccgtactctaccggcgaagtgggccgcatgggtgcgccgaaacgccgc
gaaatcggccacggccgcttggccaaacgcgcactggttgccgtgctgccttcgcaggaa
gagttcagctacaccatgcgcgtggtttccgaaattaccgagtctaacggctcgtcttct
atggcttccgtgtgcggcggctgtttgagcctgctgtctgccggtgtgccgctgaaagca
cacgttgccggtatcgccatgggcttgattttggaaaacaacaaattcgccgtattgacc
gacattttgggcgacgaagaccacttgggcgatatggatttcaaagtggccggcaccacc
gaaggcgttaccgcgctgcaaatggacattaagattcaaggtattaccaaagaaatcatg
cagattgctttggagcaggccaaagaagcgcgtctgcacattttggcgcagatgaaagaa
gccgttgaaggcccgcaagagctgtcgcaacatgctccgcgcctgtttaccatgaagatc
aaccaagacaaaatccgcgatgtgatcggcaaaggcggcgaaaccatccgcagcatcacc
gccgacaccggcaccgaaatcaatattgccgaagacggcacgattaccattgccgccacc
actcaggaagcgggcgatgcggcgaaaaaacgcatcgaagaaatcaccgccgaagtggaa
gtgggcaaagtgtacgacggcacggtattgaaactgcttgataacaacgtcggcgccatc
gtttccgtgattccgggtaaagacggtttggtacacatcagccaaatcgcccacgagcgc
gtgaaaaacgtgagcgactacctgcaagtcggccaaaacgtgaaagtgaaagcgctggaa
gtggacgaccgcggccgtgtgcgcctgtcgatgaaagccttgatcgaagcgcccgaacgc
gaaccgcgccaagagcaacccgtaagcggcgaataa
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