Nitrosotalea devaniterrae: NDEV_0312
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Entry
NDEV_0312 CDS
T04889
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
ndv
Nitrosotalea devaniterrae
Pathway
ndv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ndv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NDEV_0312 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndv03021
]
NDEV_0312 (rpoB)
Enzymes [BR:
ndv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NDEV_0312 (rpoB)
Transcription machinery [BR:
ndv03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
NDEV_0312 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
FtrD-like
Zn_ribbon_IS1595
IF2_N
Motif
Other DBs
NCBI-ProteinID:
CUR51077
UniProt:
A0A128A178
LinkDB
All DBs
Position
1:290005..293352
Genome browser
AA seq
1115 aa
AA seq
DB search
MVNISNKRWPIIQDILKREGIARQHLNSYDEFLERGLQSIIDEVGQIEIESAEYPYKIQL
GKVKLQQPRMMELDGSITHIAPMEARLRNVTYASPIMLEASVVEDGKILESRYIHIGDMP
VMVRSNACILHNLSEQKLVEHGEDPSDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVG
GNTVFKAKVYSSIVGYRAKLELIMKNDGLIVAKIPGSPVDIPVVTLMRALGLESDREIAA
SVSLVDDIQDELEGSFEKSGDVPTAKDAIVYISKRIAPGMLEEFQIKRAETLLDWGLLPH
LGKHPDNRKEKALFLGEATCKLIELKLGWIATDDKDHYGNKVIKFAGQMLADLFRTAFRN
LVRDMKYQLERSGQKRGINAVAAAVRPGIVTDKMNNAIATGNWGRGRVGVTQLLDRTNYL
STISHLRRIQSPLSRSQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSAIISVNV
PSEDIIEKLYDLGVTYVSDAKDELKKEGTRVFVDGRLIGYFKDGQKLVDSLRDLRRNFKI
HPHVGIFLYQSSFEGSTKRLYVNCNAGRVLRPLIVIKENKILLTQELIDKVSKKFLSWTD
LLHMGIIELVDANEEENSYIAIDETEIKKHTHMEVFPSAILGAGASIIPYPEHNQSPRNT
YESAMAKQSLGFSTPLMNASTYVRQHLMLYPQTPIVNTKAMGLLGLEDRPAGQNCVVAVL
PFDGYNIEDAIVLSKSSIDRGLGRTFFYRIYEAEAKQYPGGMRDNFEIPTAEGNIRGFRG
DKAYRLLEEDGVIATESTAQGGDILIGKTSPPRFMEEYREFEVKGPYRRDTSIGVRPSEN
GVVDTVVMTQSHDGGRMYKIRVRDLRIPEIGDKFASRHGQKGVVGLLVNQEDLPYTADGV
VPDVMINPHAFPSRMTVGMFLESVTGKAAALRGSKMDGSAFVGEKLEDVKGVLEQNGFKY
SGKEVMYDGRTGKPFAVDVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGG
GLRFGEMERDCLIAYGASMMLKDRLLDESDKADIYICERCGLVSYYDIKQRRFVCRVCGD
KAKVTSISVAYAFKLLLQEMMSLDVAPRLLIKERV
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggtaaacatttcaaataaacgctggcccataattcaagatatactaaagagagaagga
attgcaagacaacatcttaactcatatgatgaatttcttgaacgcggacttcaaagtatt
atagatgaagttggacagattgaaattgaaagtgccgagtatccatacaaaattcaactt
ggcaaagtaaaacttcaacaaccacgtatgatggaacttgatggttcaattactcacatt
gcaccaatggaagcacgacttagaaatgttacatatgcatctcctataatgcttgaagca
agcgttgtagaagacggcaaaattcttgaatcacgatatatccacatcggagacatgcct
gtcatggttagatcaaatgcttgcatattgcataatctatctgagcagaaacttgtagag
catggcgaagatccaagtgaccctggtggctactttatcataaatggctctgaacgagtt
atagttggactagaagatctttcttacaataaaatcattgtagatagagaaactgttggc
ggtaatactgttttcaaagctaaggtatattcttcaattgttggatatagagcaaaatta
gaattaataatgaaaaatgatggtcttattgttgcaaagattcctggctctcctgttgat
attccagtagttactctgatgcgagcattgggtcttgaatcagatcgagagatagccgca
tctgtgtcattagtagatgacattcaagatgaacttgagggctcatttgaaaagtcaggt
gatgtaccaactgcaaaagatgccatagtctacattagtaagagaattgcacctggtatg
ctcgaagaattccagataaagcgagcagaaacattacttgattggggtcttcttccacat
cttggtaaacaccctgataacagaaaagaaaaagcactattcttgggcgaagctacatgc
aaattaattgaattaaagttgggctggattgccactgatgataaagatcattatggaaat
aaagtcataaaattcgcaggtcaaatgcttgctgatcttttcagaactgcatttagaaat
ctagttagagacatgaaatatcaactagaaagatcaggtcaaaaaagaggtatcaacgca
gtagcagctgctgttagaccaggaattgttactgataaaatgaataatgctattgcaact
ggaaactggggaagaggcagagttggtgtaactcaacttcttgatagaactaattatctt
tcaactattagtcaccttagaagaattcaatctcctttgagtagaagccagcctaacttt
gaagcaagagatcttcatgctacacactttggtagaatatgcccaagtgaaactcctgag
ggttcaaattgtggactagtaaagaatttagctctctctgcaataatttctgtcaatgtt
ccatctgaagacataatagaaaagctctatgatttgggtgtaacttatgtgtctgatgca
aaagatgaattgaaaaaagagggcaccagagtctttgtagatggaagattaattggatac
tttaaagatggacaaaaacttgttgactctctaagagatcttaggagaaacttcaagatt
catccacacgttggaatattcttgtatcagtctagctttgagggctctactaaacgactt
tatgtcaattgtaatgctggaagagttttacgtcctcttattgtaataaaagaaaataaa
attctcctaactcaagaattaattgataaggtaagtaagaaattcctttcatggacagat
ttgttacacatgggaataatcgaattagtagatgctaatgaagaagaaaactcttacatt
gcaattgatgaaaccgaaataaagaaacatactcacatggaagtattcccatctgcaatt
ctaggtgcgggtgcatcaataattccatatccagaacataaccagtctccaagaaataca
tacgaatctgcaatggcaaaacaaagtcttggtttttcaactccactcatgaatgccagt
acatatgtcagacaacatctaatgttgtatcctcaaactccaattgttaacacaaaagca
atgggtcttctgggattagaggacagaccagctggtcagaactgtgttgttgcagtatta
ccatttgatggctataacattgaagatgctatcgtcttaagcaaatcctcaattgaccga
ggtcttggcagaacattcttctacagaatctatgaagctgaagcaaaacaataccctgga
ggaatgcgagataatttcgaaattccaactgcagaaggaaatattcgtggatttagggga
gacaaggcatatcgattattagaagaagatggagttattgcaaccgaatctactgcacaa
ggcggagatatattgattggaaaaactagtccaccaagatttatggaagaatatagagaa
tttgaagtaaaaggaccatatcgaagagatacctccataggagtcagaccatctgaaaat
ggagttgttgataccgttgttatgactcaatcacatgatggaggaagaatgtataaaatc
agagttagagatcttagaattccagaaattggtgataaatttgcatcaagacacggtcag
aagggtgttgtaggattacttgttaatcaagaagatcttccatacactgcagacggagtt
gtcccagatgttatgattaacccacatgcttttccgtccagaatgactgttggaatgttc
ctagaatctgtaactggaaaagcagctgcactacgtggaagcaaaatggatggctctgct
tttgttggcgaaaaacttgaagatgtaaaaggtgtcttggaacaaaatggattcaagtat
tctggaaaagaagtaatgtatgacggaagaaccggaaaaccatttgcagtagatgtattc
attggagttgtatattatcaaaaacttcaccacatggttgcagacaagattcatgccaga
gcaagaggtcaggtccagatgttgacaaaacaaccaaccgaaggacgtgcaagaggtgga
ggtctacgatttggtgaaatggaaagagactgtcttattgcatatggtgcatccatgatg
ttaaaagatagattgcttgatgaatctgacaaggctgatatctatatctgtgaaagatgt
ggattggtttcctattatgatattaaacaaagaagatttgtatgcagagtatgtggtgat
aaagccaaagtcacatctatctctgttgcatatgcattcaaactacttttacaagaaatg
atgagtcttgatgtggcaccaagacttttgataaaggagagagtataa
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integrated database retrieval system
