Nitrosotalea devaniterrae: NDEV_1737
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Entry
NDEV_1737 CDS
T04889
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ndv
Nitrosotalea devaniterrae
Brite
KEGG Orthology (KO) [BR:
ndv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ndv03016
]
NDEV_1737 (rtcB)
Enzymes [BR:
ndv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NDEV_1737 (rtcB)
Transfer RNA biogenesis [BR:
ndv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NDEV_1737 (rtcB)
Prokaryotic type
tRNA splicing ligases
NDEV_1737 (rtcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CUR52499
UniProt:
A0A128A565
LinkDB
All DBs
Position
1:complement(1489791..1491242)
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AA seq
483 aa
AA seq
DB search
MSSLIPKKIREMEYRIEADPSKGMKVPVTIYADEKLLQKMLTDRTIQQAINVSTIPGVLK
HVVVLPDGHEGYGFPVGGVAAMDAENGMISPGGVGYDINCGVRLIKTNLMEKDVRPRLKE
LVTELFTSIPSGVGSKGAVRLTSSDLDEVLVKGVQWAVDHGYGSKDDADVCEENGQIKNA
DPGKISPTARKRGAPQLGSLGSGNHFLEVQRVDQIHDKEAAKKMGIFNEGQITVLIHCGS
RGFGHQVCSDYLRVSEQALSKYKINLVDRELACVPNSSEEGESYRKAMFAALNYAWSNRQ
MITHWTRKAFERVFKQTESDLDMKLIYDVAHNIAKVEKHKIDGEMRSVVVHRKGATRAFP
QGRDEVPKKYRDIGQPVFIPGSMGTGSWILLGKPGSMDLSFGSTAHGAGRMMSRSAARRN
FTESQVQKSLGDKGIFIKALTREGVVEETPEAYKDVDAVANVSHELGIATKVAKLVPIGV
IKG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcactaattccaaagaaaatacgtgagatggaatatcgtattgaagctgatcca
tctaaaggcatgaaagttccagtgacaatttatgctgatgaaaaattattgcagaaaatg
ctaaccgatagaacaattcaacaagcgatcaacgtatccacaatacctggtgtgctaaag
catgttgtagttcttccagatggccatgagggttatggttttcctgttggaggcgtagct
gccatggatgctgaaaatggaatgattagccctggaggggtaggttatgatatcaactgt
ggtgttaggcttatcaaaacaaatcttatggaaaaagatgttcgacctaggctaaaagaa
cttgtcactgaactattcacatctattccatctggtgtaggttccaagggtgcagtaaga
ctaacctcatctgatcttgatgaagttcttgtaaaaggagtacagtgggcagttgatcac
ggatatggttcaaaggatgatgctgatgtgtgtgaagaaaatggtcagataaaaaatgct
gatcctggaaaaatatctcctactgcacgtaaaagaggcgcacctcaattaggaagcctt
ggttctggaaatcactttcttgaggtacaacgtgttgaccaaattcatgacaaagaggct
gctaaaaaaatgggaattttcaatgaaggccaaattactgtattgattcactgtggttca
agaggttttggacaccaagtttgtagtgattatttgcgggtatcagaacaagcgctttct
aaatataaaataaatctagtagacagagaacttgcatgtgttccaaattcttcagaagag
ggtgagtcatatagaaaagcaatgtttgccgcattaaattatgcatggagtaacagacag
atgatcacacactggacaagaaaagcctttgagcgagtcttcaaacaaacagaatctgat
cttgatatgaaactcatctatgacgtagctcataatattgccaaagttgaaaaacacaaa
attgatggtgaaatgcggtcagttgtagttcatcgaaaaggtgcaacaagagcattccca
caaggaagagatgaagtcccaaaaaaatatcgagatattggtcagcctgtctttatacct
ggatctatgggaactggtagctggattttgttgggaaaaccaggctctatggatttgagt
tttggttctactgctcatggtgcaggaaggatgatgtcaagatctgctgcacgaagaaat
ttcacagaaagtcaagttcaaaaatcactaggtgataaaggtattttcataaaagctctt
acacgagaaggcgtggtagaagagacgcctgaagcatacaaagatgttgatgctgtggca
aacgtatctcatgaacttggaatagctacaaaagtagcaaaattggttccaattggggta
atcaagggttga
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