Nitrosotalea devaniterrae: NDEV_1934
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Entry
NDEV_1934 CDS
T04889
Name
(GenBank) RNA-binding protein (Consists of S1 domain and a Zn-ribbon domain)-like protein
KO
K07573
exosome complex component CSL4
Organism
ndv
Nitrosotalea devaniterrae
Pathway
ndv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NDEV_1934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndv03019
]
NDEV_1934
Messenger RNA biogenesis [BR:
ndv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NDEV_1934
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NDEV_1934
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Ribosomal_L37e
Motif
Other DBs
NCBI-ProteinID:
CUR52696
UniProt:
A0A128A5Q9
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All DBs
Position
1:1661485..1662054
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AA seq
189 aa
AA seq
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MQIKALSQKPTLPGDKIAIIEEFEMGDNTFDDGQSIRSLVVGTPEFDKTNRIAKINEMRR
PAVAKSGDVITGNISALMNNMFAINILYINGKPTHSGLECICQARGAKKRILVRVGDIVT
AKILNLLNGVVHATISEPELGVLFTQCNKCGAKVIAMGSNIKCIDCGYIEERKLSTRFGN
SDFIKFNSN
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaatcaaggcattgtctcaaaaaccaacccttccaggggataaaattgcaataatt
gaagaatttgaaatgggtgacaatacatttgatgacggacagtcaataagatcattagtt
gtaggtactccagaatttgataagactaatcgcatagcaaaaatcaatgaaatgcgaaga
ccagcagttgccaaatcaggcgatgttattacaggaaatatttcagcgttaatgaataac
atgtttgcgataaatatcttatacataaatggtaaacctacacattctggtctagaatgc
atttgccaagcgaggggagcaaaaaagaggatccttgtgagagttggcgacatagtaact
gcaaaaatacttaatcttctaaatggtgttgtacatgccacaattagtgaacctgaactt
ggagttttgttcacacagtgcaacaagtgtggagccaaggtcatagcaatgggtagcaac
ataaaatgcatcgattgtggatacatagaagagagaaaattatcaactagatttggaaac
agcgattttataaaattcaattccaactaa
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