Nocardiopsis eucommiae: KGD82_17275
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Entry
KGD82_17275 CDS
T08767
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nec
Nocardiopsis eucommiae
Brite
KEGG Orthology (KO) [BR:
nec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nec03016
]
KGD82_17275
Enzymes [BR:
nec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KGD82_17275
Transfer RNA biogenesis [BR:
nec03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KGD82_17275
Prokaryotic type
tRNA splicing ligases
KGD82_17275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QVJ00477
UniProt:
A0A975L880
LinkDB
All DBs
Position
complement(3715940..3717127)
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AA seq
395 aa
AA seq
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MPYTEVPGDLVPIRMWADPGQVESAAMVQLRNVTRMPWTHGLAVMPDVHYGKGATVGSVI
AMRDAVSPAAVGVDIGCGMTAVRTGLTAERLPDDLRSLRSALEAAIPVGFHAHDEPVDPT
RVPGLGGTGWDRFWEGFDGLASAVHPRNARARRQMGTLGGGNHFLEVCLDDDGVVWMVLH
SGSRNIGKELADHHITQARALPHNQDLPDRDLSVFVSGTPEMDAYRRDLFWAQDYARRNR
DVMMALACQVLAERVPGTTFEQRISCHHNYVAEETYDGVDVLVTRKGAIRAGAGEFGVIP
GSMATGTYIVKGLGNPASFNSASHGAGRRMSRNKARKTFTRADLVEQTRGVECRKDLGVV
DEIPAAYKDLESVIEAQTDLVEVVAHLRQVVCVKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgccctacaccgaagtccccggcgacctggtaccgatccgcatgtgggccgatcccggg
caggtcgagtccgccgccatggtccagctccgcaacgtcacgcgcatgccctggacgcac
ggcctggccgtcatgcccgacgtccactacggcaagggggccacggtcggctccgtgatc
gcgatgcgtgacgccgtcagccctgcggccgtgggcgtcgacatcggctgtggcatgacc
gccgtgcgcaccggcctgaccgccgagcgccttcccgacgacctccggtccctgcgctcg
gccctggaggccgccatcccggtcggcttccacgcccacgacgaacccgtcgaccccacg
cgggtccccgggctgggcggtaccggctgggaccgcttctgggagggtttcgacgggctc
gcctccgccgtgcacccccggaacgcacgtgcccggcgccagatgggaaccctgggcggc
ggcaaccacttcctggaggtgtgcctcgacgacgacggggtcgtctggatggtcctgcac
tccggctcccgcaacatcggcaaggagctggccgaccaccacatcacccaggcgcgggcc
ctgccgcacaaccaggacctgcccgaccgcgatctctccgtgttcgtgtccgggaccccc
gagatggacgcctaccggcgcgacctgttctgggcgcaggactacgcccgccgcaaccgc
gacgtcatgatggccctggcctgccaggtcctggccgagcgcgtccccggcaccacgttc
gagcagcggatctcctgccaccacaactacgtggcggaggagacctacgacggcgtggac
gtgctcgtcacccgcaagggggcgatccgcgcgggggccggggagttcggcgtgattccc
gggagcatggccaccgggacgtacatcgtcaagggcctcggcaaccccgcctccttcaac
tccgcctcgcacggcgccggacgccgcatgagccggaacaaggcccgcaagacgttcacc
cgcgcggacctcgtcgaacagacccggggcgtggagtgccgcaaggacctcggcgtcgtg
gacgagatccccgccgcctacaaggacctggagtcggtgatcgaggcgcagaccgacctc
gtcgaggtggtcgcccacctgcgccaggtggtgtgcgtcaaggggtga
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