Nostoc edaphicum: HUN01_07210
Help
Entry
HUN01_07210 CDS
T07001
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ned
Nostoc edaphicum
Brite
KEGG Orthology (KO) [BR:
ned00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ned03016
]
HUN01_07210
Enzymes [BR:
ned01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HUN01_07210
Transfer RNA biogenesis [BR:
ned03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HUN01_07210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
CSD_RNase_II
HTH_RNase_II
KhtT_N
Motif
Other DBs
NCBI-ProteinID:
QMS87378
UniProt:
A0A7D7L9V2
LinkDB
All DBs
Position
complement(1064560..1066620)
Genome browser
AA seq
686 aa
AA seq
DB search
MEKGTLVEFRVQGDRRLGIVERPDGKTRWFVVDERGQSHSLAPRQITYTVTGQTYKPSDI
ASFLEQVKPYVDPSSLEVAWELLVEDGETVTPNLMANLLFSESAAPHCYAAYCLLSDDKL
YFKQKGDAYEARTASQVAERKHQLEVEALKAKGQQEFLIRVEQALKGEAVEWQRHDRQRL
EGLEKYAALLADTVRTGVNYDSLARAYPPSAPVLETMTMLGRPTTPQGAFQLLVDLGWWS
PYENLFLRRSSIPIQFPNKVLEVAQQRLDFPPIDSDANRLDLTHLKVYTIDDETTTEIDD
GLSWEVLPDGRERIWAHIADPTRWLVPEDELDLEARKRGSTVYLPTGMIPMFPEVLATGP
MSLIQGKVCCALSFGIILGSTGVVEDYSIHTSLIKPTYRLTYEDVDEMLQLRVQAEPEIA
AIATWAQRRKAWRYAQGAISITMPEATIKVKGDEINIDILDDSPSRQLVAEMMIVAGEVA
ARYGKAHNIPLPFRGQPQPELPPDEELLLLPAGFVRACAMRRCMPKSEMSITPLRHAGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEVLPFSAEQLKEVMMNVTSITQELTMVERQT
NRYYALEYLRRHPEETWDVTVLMWLREDSNLALILLEDLGLQLPMTFKRSVNLGEQIVVK
VSHADPQKDMIQFQEIIYQEAQTAAN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttagggttcaaggcgatcgccgtctgggcatcgta
gaacgtccagacggtaaaacccgctggtttgtggtagacgaacgtggtcaatcccacagc
ctcgcgcctagacaaataacttatacagttaccggacagacttacaagccctctgacatt
gccagctttttggaacaggtcaagccttatgtagacccatctagcttagaggtagcttgg
gaattactggttgaggatggggaaacagtcaccccaaacctgatggcaaatttgctattt
tcggaatcagccgcgcctcattgttacgccgcctattgcttgttatcagacgacaaactt
tatttcaagcaaaaaggagacgcttatgaagcccgaactgcttctcaagtggcagaacgc
aagcaccaactggaagtagaggcactcaaagctaagggacagcaggaatttttaattcgt
gtagagcaggcgctcaagggtgaagcagtagaatggcagcgccacgatcgccagcgctta
gaaggactagaaaaatacgcagcgctacttgctgacactgtgcgaacgggagtaaattat
gactccttggctcgtgcttatccgccaagcgctccggtattagaaactatgaccatgctg
ggacgacccacaacaccccaaggagcctttcaactgctggtagatttgggttggtggagt
ccttatgaaaacttgttcctgcgtcgttcttcaattccgattcagtttcctaataaggta
ttagaagtggcgcaacagcgtttggatttcccgccgattgactcagatgcaaaccgcctg
gatctgactcatctgaaggtctacaccattgatgatgaaactaccacagagatcgacgat
ggtctaagttgggaagtactccccgatggacgggaacggatttgggcgcatatcgccgat
cctactagatggttagtgccggaagatgaattagatttggaagctagaaagcggggtagt
acagtctatttacctacggggatgattcccatgtttccagaggtattggcaactgggcca
atgagtctgatacagggaaaggtttgttgcgccctcagtttcgggattattttaggtagt
actggggtagtagaagattacagcattcataccagcttgattaagccgacttatcgcctc
acctacgaagatgtagatgaaatgctgcaattacgagtacaagcagaaccagaaattgca
gcgatcgctacttgggcacagcggcgcaaagcttggcgctacgcccaaggggcaattagc
atcaccatgcccgaagcaacgatcaaagtcaaaggtgacgagatcaacattgatattttg
gacgattccccgtcgcggcaactggtagcagaaatgatgattgttgccggtgaagttgcg
gctcgttatggtaaagctcacaacatacctttgccttttcgcggtcagccgcaaccggaa
ttacccccagacgaagaattactcctacttccggctggattcgttcgcgcctgcgccatg
cgtcgttgtatgcccaagagtgaaatgagcattacgcctctgcgtcatgctggtttgggt
ttggatacttatacccaagcaacctctcccattcgtcgctacagtgacttgcttacccac
ttccaactgaaagctcatttgcggggcgaagttttaccattttccgcagaacaacttaaa
gaagtgatgatgaatgtaaccagcatcacccaagagttgacgatggtggaacggcaaact
aatagatattatgctctagagtatttacgccgtcatccagaggaaacctgggatgtgaca
gtgttgatgtggctgcgggaagacagcaacttagccttaattttgttagaagatttgggt
ttgcagttaccaatgactttcaaacgttctgtgaatttgggcgaacagatagtagtgaaa
gttagccacgccgatccacaaaaagatatgatccagtttcaagaaataatttatcaagaa
gcccaaacagcggcgaattaa
DBGET
integrated database retrieval system
