Nostoc edaphicum: HUN01_11900
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Entry
HUN01_11900 CDS
T07001
Name
(GenBank) RNA polymerase sigma factor, RpoD/SigA family
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
ned
Nostoc edaphicum
Brite
KEGG Orthology (KO) [BR:
ned00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ned03021
]
HUN01_11900
Transcription machinery [BR:
ned03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HUN01_11900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
CTD3
EnY2
DUF5315
Motif
Other DBs
NCBI-ProteinID:
QMS88262
UniProt:
A0A7D7QFK6
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All DBs
Position
2202468..2203451
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AA seq
327 aa
AA seq
DB search
MPTVNTQTENLNTKFTADMVRTYLREIGRVALLTREQEIVFGKQVQQMMTLIDAKEALAK
KLQREPSSQEWADHVQKSETEIQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLD
LIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI
KKVQRELAQTLGRSPTPAEIAKELELEPAQIREYLNMARQPVSLDVKVGDNQDTELQEML
EDNGPSPEYYTNQEFLRQDLNNLLAELTPQQREVVALRFGLEDGNEMSLAKVGERLNLSR
ERVRQLEHQALAHLRRRRANVKEYVAS
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgcctactgtcaatacccaaacggaaaacctcaacaccaaattcacggctgatatggtg
cgaacctatctgcgagaaattggtcgtgtagcactactaacccgtgagcaagaaattgtc
tttgggaagcaggtgcaacaaatgatgacgctcattgacgccaaggaagctttggcgaag
aagttgcaacgcgaaccgagttcacaagagtgggctgatcacgttcaaaaatcggaaacc
gagatccaacaaactgtggcgcaaggtaagcgggcaaagcaaaaaatgatcgaagcgaat
ttgcgcttggttgttgctattgctaaaaagtaccaaaagcggaatatggagtttctggat
ttaatccaggaaggaacactaggattagagcggggtgtggagaaatttgacccaatgagg
ggttataaattctcgacttatgcttactggtggattcgccaagcgattacccgtgcgatc
gctcaacaaggtcgtactatccgcttacccatccatattaccgagaaactgaacaaaatc
aaaaaagtgcaacgcgagttggctcaaaccttggggcgatcgccgactccagcggaaatt
gccaaagaactggaactcgaacctgctcagattcgggagtacctgaatatggcgcgtcaa
ccagtgtctttggatgttaaagttggcgataaccaggatactgagttgcaagaaatgctc
gaagataacggcccatcaccagagtattacaccaaccaggaattcttacgccaagacttg
aacaacctgctagcagaactaacaccgcaacagcgagaagttgtagctttacgctttggt
ttagaagatggtaacgaaatgtcattggcgaaagtaggtgagagattgaatctcagccgt
gaacgtgtgcgccagttagagcatcaagctttggctcatctgcgtcgccgtcgtgccaat
gttaaagaatacgttgctagttaa
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