Nostoc edaphicum: HUN01_19610
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Entry
HUN01_19610 CDS
T07001
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ned
Nostoc edaphicum
Brite
KEGG Orthology (KO) [BR:
ned00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HUN01_19610 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ned03021
]
HUN01_19610 (rpoD)
Transcription machinery [BR:
ned03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HUN01_19610 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QMS89679
UniProt:
A0A7D7QE48
LinkDB
All DBs
Position
4057572..4058741
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AA seq
389 aa
AA seq
DB search
MNQANNVLESIYQPDLEIINQPELELEELLIDDEEDLLIIDEGDEEFLEPQSDEDDAKSG
KAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLC
EQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ
DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR
IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF
IESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVT
RERIRQIEAKALRKLRHPNRNSVLKEYIR
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggctaacaacgtactcgaaagcatatatcagcctgacctagaaataataaat
cagcctgagctcgagttagaagaactcttaatagacgatgaagaggacttgctgatcatc
gatgaaggtgacgaggaatttttagagcctcagtctgatgaggacgacgcaaagtctgga
aaagccgctaaatcgcgtcgtcggacacaaagcaagaaaaagcactataccgaagattca
attcggctttacttgcaagaaattggtagaattcgtctgttgcgggcagacgaagaaatt
gaattggcgcggaaaatagccgatttgctggaattagagagagtccgcgaaagactctgt
gagcaattagatcgcgatcctcgagatagtgaatgggcagaagcagtacaactgccacta
ccagcctttcgttatcgcctccatgttggtcgtcgggcgaaagacaagatggtgcaatct
aacctccgtcttgtagtttcaattgctaagaagtacatgaatcgtggtttgtcgttccag
gacttaattcaggaaggcagtctcggtttgattcgtgccgctgaaaagtttgaccacgaa
aaaggttataagttctccacctatgctacatggtggattcgtcaagcaattacccgtgcg
atcgcagatcaatctcgcacaattcgtcttccagttcacctttacgaaaccatctctcgg
attaagaaaactaccaagttgctatctcaagagatgggtcgtaagcccactgaagaagaa
atcgccactcgcatggaaatgaccattgagaagttgcggttcattgctaaatctgcccag
ttacctatctcactagaaacgcctattggtaaagaagaagattctcgattgggcgatttt
attgaatccgacggtgaaacgccagaagaccaagtttccaaaaatcttctccgcgaagac
cttgaaaaagtcctcgacagtctcagcccacgtgaacgtgatgttctcagactacgttac
ggcttggatgatggtcggatgaaaacccttgaggaaatcggacagattttcaacgttacc
cgcgaacggattcgtcaaattgaggcaaaggcactccgcaaattacgccatccaaatcgc
aacagcgttctcaaggaatatattcggtag
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