Nostoc edaphicum: HUN01_20250
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Entry
HUN01_20250 CDS
T07001
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ned
Nostoc edaphicum
Brite
KEGG Orthology (KO) [BR:
ned00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ned03016
]
HUN01_20250
Enzymes [BR:
ned01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HUN01_20250
Transfer RNA biogenesis [BR:
ned03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HUN01_20250
Prokaryotic type
tRNA splicing ligases
HUN01_20250
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QMS89799
UniProt:
A0A7D7QE75
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All DBs
Position
4228619..4229800
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AA seq
393 aa
AA seq
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MPYEKLEITTPAPVLSWANHSLGPEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMSAIKTSFSAEQLEGKLKKIRLDIEAAIPTGFNENKDVEKS
VSNWQHWDDFKDLHRGVQDLQGKAMKQMGSLGGGNHFIEVCLDTENQVWLMLHSGSRNIG
NKLAQCHIHTARELAKMAGNKLPDPDLAHFVAGTPEFQAYWHDLQWSQNYARVNRDVMMA
RFKHIVEKHLVGGKATKPLLQVNCHHNYAEKEVHFDEDVYVTRKGAVRAQTEDYGIIPGS
MGAKSFIVKGKGNAHSFCSCSHGAGRLMSRNKAKNVYTLDDLIEQTNGVECRKDEGVLDE
IPGAYKPIEQVMANQADLVEVVATLKQVLCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccctacgaaaagttagaaattaccacaccagcacccgtcttatcttgggcaaatcac
tctttggggccagaagaaaccaagatggccaagaatgtggcatcattaccatttgtattt
aagcacgtggcattaatgccagatgttcacttaggaaaaggtgctttagtgggttctgta
attgcaaccaaagaggcaattataccagcggctgtcggtgtggatattggttgcggtatg
agcgctatcaaaacatcattttccgccgaacaactagaaggtaaattgaagaaaattcgc
ctggatattgaagcagcaattccaactggattcaacgaaaataaagacgttgaaaaatcc
gtcagcaattggcaacactgggatgattttaaagacttacatcgcggcgtgcaagaccta
caaggtaaagcaatgaaacaaatgggttctctgggtggaggaaaccactttatagaagta
tgcctcgatacagagaatcaagtttggctgatgctgcattctggttcgcgtaacattggt
aataaacttgcccagtgtcatattcacacagctagagaattagcaaaaatggcaggtaat
aaattgcctgacccagatttagctcattttgtcgcaggtacgccagaattccaggcatat
tggcacgatttacaatggtcacaaaactatgcgcgtgtcaaccgcgatgtgatgatggcg
cgttttaagcacatagttgagaagcatttagtcggtgggaaagcaactaaacctttattg
caagttaattgtcatcacaattacgccgaaaaagaagtgcattttgacgaggatgtatat
gttactcgtaaaggtgcagtccgcgcccagactgaagattatgggattattcctggttcg
atgggggcgaagtctttcatcgttaaaggtaaaggtaatgcccacagcttctgttcttgt
tctcacggtgcagggcgtttgatgtctagaaataaggcaaaaaatgtctacacacttgat
gatttgatagagcaaacaaatggcgtagaatgtcgtaaagatgagggtgtgttagatgaa
attcctggtgcttataagccgattgagcaagttatggcaaatcaagcagatttagttgaa
gttgtagcaacactcaagcaagttctttgtgttaagggataa
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