Nostoc edaphicum: HUN01_24395
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Entry
HUN01_24395 CDS
T07001
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ned
Nostoc edaphicum
Pathway
ned03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ned00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUN01_24395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ned03019
]
HUN01_24395
Enzymes [BR:
ned01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUN01_24395
Messenger RNA biogenesis [BR:
ned03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUN01_24395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_22
FANCF
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QMS90565
UniProt:
A0A7D7QPL6
LinkDB
All DBs
Position
complement(5163462..5164799)
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AA seq
445 aa
AA seq
DB search
MSFSHLGLSNEIIRAVTERGYTEPTPIQMQAIPAVLSGSDLLAGAQTGTGKTASFTLPLL
HRLSSNKGKGTSNGYPPIRALILTPTRELAAQVEESVREYGKYLNLNSMVMFGGVGINLQ
KQRLRGRVDILVATPGRLLDHVQQGTLNLSHIEVLVLDEADRMLDMGFIHDIRRILSLLP
KQRQNLLFFATFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKVYQVDRDKKRQLLAH
LIRRDNWYQVLVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNGTLQV
LVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVCVDEQHLLT
DIEKLIEQRLPKEVVDGFGPNPDIKAEPIANGRQHRAKTGGDKRPARTAKPLPQTSAKRK
AAPPATNGDNRNRSSASRRSAKRDR
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctcatctcggcttgtccaatgaaattatccgtgccgttaccgaacgaggg
tacacggaacccacgccaatccagatgcaggcgattcccgctgtattatctggtagcgat
ttgttagctggcgcacaaactggcactggaaagaccgctagttttaccctaccgcttttg
catcgtttgtcgtccaacaagggcaaaggtacatctaatggatacccaccaattcgggcg
ctaattctcaccccgactcgcgaactcgctgcacaagtggaagaaagcgtgcgcgagtat
ggcaagtacttaaatctaaactcaatggtgatgtttggcggagtcggtattaatctgcaa
aaacagcgtttgaggggtcgagtagatattttggtcgctactccagggcgactactagac
cacgtacagcaggggacgctcaacctgtcgcatattgaggttttagtgctggatgaagca
gatcggatgttggacatgggctttattcatgatatccgccgcatcctttcacttctgccc
aaacagcgacagaatttgctatttttcgctactttctcagacaaaattaaggcactagcc
gccggactgctcaataacccgaagatgattgaggtagcacgccgcaacgttaccgccgaa
acgatcgcccagaaagtttaccaggtagaccgtgacaagaaacgtcaattacttgctcac
ttgattcggcgagataattggtatcaagtgctagtgttcactcgcactaaatatggtgct
gaccgtttggttaagcagttgggtgaagaccggattcaagcactggcaattcacggtaat
aagagccagccggtgcgtactaatgctctagcaaagttcaaaaatggcacattacaagta
ttggtggcgacggacattgctgctaggggtcttgatatcagcgaactgccccatgtagtt
aacttcgatttgcccaatgtaccagaagattatgttcatcgcattggtcgcaccggtcgc
gctggtgcatcaggtgaagccgtgtcgctggtgtgcgttgatgaacagcatctattgaca
gatattgaaaaactgatcgagcagcgcttaccaaaggaagtggttgatggctttggcccc
aaccccgacatcaaggctgaaccaatcgcaaatggacggcaacacagagccaaaactgga
ggtgataagcgtccggctcggactgctaaaccgctaccacagacatcggctaaacgtaag
gcagcgccacctgccacgaatggtgataatcgtaatcgttcttccgcatcgcgccgttct
gcgaaacgcgatcgctga
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