Nostoc edaphicum: HUN01_25030
Help
Entry
HUN01_25030 CDS
T07001
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ned
Nostoc edaphicum
Brite
KEGG Orthology (KO) [BR:
ned00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HUN01_25030 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ned03021
]
HUN01_25030 (rpoD)
Transcription machinery [BR:
ned03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HUN01_25030 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_8
TPR_9
TPR_17
TPR_16
Sigma70_r2
Sigma70_r4
TPR_12
Sigma70_r3
TPR_6
TPR_14
TPR_19
Sigma70_r1_2
NERD
TPR_CcmH_CycH
Fis1_TPR_C
ARM_TT21_N
TPR_20
TPR_10
MIT
NatA_aux_su
ARM_TT21_2nd
ANAPC3
ARM_TT21_C
MINAR1_C
UPF0154
GrpE
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QMS90688
UniProt:
A0A7D7LF93
LinkDB
All DBs
Position
5299505..5302441
Genome browser
AA seq
978 aa
AA seq
DB search
MEFYPDNIFDANNKAEKEVWQQVKSAFRDDPGEAFHGYQLFDRYGNLEREIDILIVHRQL
GLWVIECKGCYINDIEAIKGAEWKMKNWYKDCIKPVKQAQDQMFALKNHLRKELDFCASL
NLNFRVAIPFIGQEQWQNKGFHNLPNIQGVVLTREDLKPYTLKHNFTQSVQRRQRNLTDE
QWRSLMCVFGGTNQILVDKASFSVSKHISVEKEKTYKTDESKTPRPVCKIIKLPRYKFPI
NSLPIIGNNLLESIFQPDLEIINQPEIELEELLIDDEEDLLIINEGEDEFLEIPLDEEDG
YSGRSTNFHHWKQTQKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE
RLCEQLDRDPRNSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL
SFQDLIQEGSLGLIRAAEKFDHEKGYKFSNYATWWIRQAITRGIADQSRTIRLPVHLYET
ISRIKKTIKLLSQEMGRKPSEEEIAIRMEMTIEKLRFIAKSAQLPVSLETPIYLVLDKDP
WFYKGDIEEYLCLADFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDD
GRMKTLEETGQILNATRERIRQIEAKALRKLRHPNRNSILKEYIRGYQQHDLQQKKYEHQ
FKGNQNYARKTNNATNYVEKGLICHRNRDFLGAIENFTQALKLNPNNAQLHYQRGLAKTE
GEFQKGAIEDFTQAINVNPQYIDAYYQRGHVHYSLGDNLKAIEDYSEIIFLNPNEALAYF
YRGFVRSNLGEMHEAIGNYSQALKIKPDLAEAYFHRGVAFYRLKDLHRAIENYNFTLRIY
PDFAEAYSRRGLAHYYLGNYQEALEDYSQAVQINCEDTLTYYYRGLVYENLSNYIKALKD
YNQVLEINPAFTEAYYNRGSVHYNLGNYQQALEDLNQLLRINPNNSQAYNKRSSIRAALK
DYQGAMEDLKNASEFHYV
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggaattctatcccgacaatatttttgatgccaataacaaagctgagaaagaagtttgg
caacaagtaaaatctgccttcagggatgatcctggtgaggcatttcatggttatcagcta
tttgacagatatggaaatcttgagcgagagattgatattcttattgtccatcgtcagtta
ggactatgggtgattgaatgtaaaggatgctacatcaacgatatagaagctattaagggt
gctgaatggaaaatgaaaaactggtataaagactgcataaaaccagttaagcaagcacaa
gaccagatgtttgcgcttaaaaaccatttacgtaaagagctagatttttgtgcctcatta
aacttaaactttagagttgctattccctttattggccaagaacagtggcaaaataaagga
tttcataatttgccaaatattcaaggtgttgtactgactagagaagatttgaaaccttat
actttaaaacataattttactcagagtgttcaaaggagacaaagaaatttaaccgatgaa
caatggcgatcgctaatgtgtgtttttggtggaactaatcagatacttgtggacaaagca
tcattttcagtatccaaacacatctctgtagaaaaagaaaaaacgtacaaaacagatgaa
tcaaaaacccctcgtcctgtctgtaaaataattaagttgccccgttataagtttcctatt
aatagcttgcctattattggtaacaacttactcgaaagcatatttcagcctgacctagaa
ataataaatcagcctgagatcgagttagaagaactcttaatagacgatgaagaggacttg
ctgatcatcaatgaaggcgaagatgaatttttagaaattccgttagatgaagaagacggt
tactctggtaggagtacgaacttccatcattggaagcaaactcagaaaaagcattatacc
gaagattcaattcgcctttacttgcaagaaattggtagaattcgcttgctgcgtgcggat
gaagagattgaactggcacggaaaatcgctgatttgctggaattagagagagtgcgggaa
aggctctgtgaacagttagatcgcgatcctcgtaatagtgaatgggcagaagcagtacaa
ctacctttgccagcttttcgttatcgcctccatgttggtcgcagggcgaaagacaagatg
gtgcaatctaacctccgtcttgtagtttcaattgccaagaaatacatgaatcgtggtttg
tcgttccaagacttaattcaggaaggcagtctcggtttgattcgtgccgccgaaaagttt
gaccacgaaaaaggttataagttctctaattatgctacatggtggattcgtcaggcaatt
accagggggatcgccgaccaatctcgcactattcgtcttccagttcacctatacgaaacg
atttctcggatcaagaaaacaattaagctgctttctcaagaaatgggtcgcaaacccagt
gaggaagaaatagctattcgtatggaaatgaccattgagaaactgcggtttattgctaaa
tctgcccagttacctgtttctctagaaactcccatttatttagttctagataaagaccct
tggttttataagggagatatagaagaatatttatgcttggcagattttatagaatccgat
ggtgaaacgccagaagatcaagtttccaaaaatcttctgcgcgaagacctcgaaaaagtc
ctcgatagtctcagccctcgtgaacgcgatgttctcagactgcgttacggcttggatgat
ggacgcatgaaaacccttgaggaaactggtcagattcttaacgccacccgcgaacggatt
cgtcaaattgaagcgaaagcactacgcaaattacgccaccctaaccgtaatagtattctt
aaagagtatattcgtggctaccaacaacatgacttgcaacagaagaaatatgagcatcaa
tttaaagggaatcagaattatgcacgaaagacaaataatgctactaattacgttgaaaaa
gggctgatatgtcatcgaaatcgggattttttgggagcaattgagaactttacccaagca
ctgaagcttaaccccaataatgcccagctacactaccaaagagggctagccaagactgag
ggagaatttcagaaaggggcgattgaagattttactcaagctattaacgtaaaccctcaa
tatatagatgcttactaccagaggggtcatgttcactacagtttgggagataatctaaaa
gcaattgaggattacagcgaaataatattccttaatcccaatgaagccttagcttacttc
taccgtggttttgtccgtagcaatctgggagagatgcacgaagctattggtaattacagc
caagcattgaaaattaagcctgaccttgctgaagcttattttcaccgaggagttgccttt
tatcgcttaaaagacttacatagagcaattgaaaattacaatttcactttacggatctat
cccgactttgctgaagcttacagtcggcgggggcttgcacactattacctgggaaattac
caagaagcgcttgaagattattcccaagccgtgcaaattaattgtgaagatactctaaca
tactactaccgtggacttgtgtatgagaacttaagtaactatataaaagcacttaaggac
tataaccaagttttagaaatcaatcctgcatttaccgaagcttactataaccggggtagt
gttcattacaatctgggaaactatcaacaagcacttgaagatttaaatcaattactgcgt
attaatcctaacaattctcaagcttataacaaacgaagtagcattcgtgctgccctgaaa
gattaccaaggtgcaatggaggacttaaaaaatgcttcagaattccactatgtgtaa
DBGET
integrated database retrieval system
