Nostoc edaphicum: HUN01_25050
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Entry
HUN01_25050 CDS
T07001
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ned
Nostoc edaphicum
Pathway
ned03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ned00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUN01_25050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ned03019
]
HUN01_25050
03009 Ribosome biogenesis [BR:
ned03009
]
HUN01_25050
Enzymes [BR:
ned01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUN01_25050
Messenger RNA biogenesis [BR:
ned03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUN01_25050
Ribosome biogenesis [BR:
ned03009
]
Prokaryotic type
rRNA helicases
HUN01_25050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
HEM4
Sigma70_r4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QMS90692
UniProt:
A0A7D7LHB2
LinkDB
All DBs
Position
complement(5304331..5305842)
Genome browser
AA seq
503 aa
AA seq
DB search
MTLSFQELGISQERVEQLEKIGFTEPTNIQVQAIPQLLSGRDVVGQSQTGTGKTAAFSLP
ILERLDINQRAVQAIVLTPTRELAMQVHDAIAQFIGNEGLRVLAIYGGQSIDRQMLQLKR
GVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPVDRQTA
LFSATMPPSIRMLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTSQLQGAGHSVDEYHGDLSQQARERLLIRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQTFERH
NRQSWQVLTIPTRAQIEAKHILKLQELVREALTGERLASFLPIVSELIEEYDAQAIAAAA
LQIAYDQTRPAWLSSDVEIPQEESSAPKPRLGKRRESSSDRPRAAWKSDSSNGDEERHSS
PKPKLRTSGSGRESSASPSKKLG
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgactctttcattccaagaactaggcatttcccaagaacgtgtcgaacaactagaaaaa
atcggttttaccgaacccactaacattcaagtccaagcaattccccaattgctgagtggt
cgtgatgtagtaggtcaatctcaaactggaacaggcaaaacggcagcattttcactgcca
attttagagcggctggatattaatcaaagagccgtgcaagccatagttttaacaccaact
cgtgaattagcgatgcaagttcacgatgcgatcgcacaattcatcggtaatgaaggattg
cgggtgttagcaatctacggtggtcaatcaattgaccgccaaatgttacaactcaaacgt
ggcgttcacatggtcgtgggtactccaggacgggtgatcgatttgctcgatcgcggttgt
ttaaagctcgatcaagtgaagtggtttgtgttggatgaagccgatgaaatgttgagcatg
ggctttatcgacgatgtgatcaaaatcctctcgcaagcgcccgtagatcgccaaacagct
ttattctcggcaacaatgccaccctcgattcggatgttggtgaataagttcttgcgatcg
cctgcaactgtcacagttgagcagccaaaagccgctcccaacaagattaatcaagtagct
tatttgatcccccgccactggacaaaagccaaagctttacaaccaattctggaaatggaa
gatccagaaacagctttaatctttgtccgcaccagacgcacagccgcagaactcaccagt
cagttacaaggggctggtcatagtgtcgatgaataccacggtgacttgtcccaacaagca
cgggaacggttattaattagattccgcaaccgtcaagtccgctgggtggtagcaactgac
attgcagcacgggggttagatgtcgatcaactttcccatgtgatcaactacgacttaccc
gacagcgtagaaacctacgtccaccgcattggtcgtactggtcgtgctggtaaagaagga
acagcaatttctttagtacaaccatttgagcgccgcaaacagcaaacatttgaacgtcat
aaccgccaaagttggcaagtgctgacaattcccacacgcgcccagattgaagcaaaacac
attctgaaattgcaagaactagtgcgagaagccttgacaggtgagcgtttggcttcattc
ttgccaattgtcagcgaactgattgaagaatacgatgctcaagcgatcgctgccgcagca
ttgcaaattgcttacgatcaaactcgtcctgcttggttgagttcagacgtggaaattccc
caagaagagtcttctgctcccaaacccagacttggtaagcgtcgtgaatcttccagcgat
cgcccccgtgctgcgtggaaatcagatagcagcaatggagatgaagaaagacattcttca
cccaagcccaaactgcggacaagtggaagtggtcgtgaatcttctgcatcccctagtaaa
aagctaggttaa
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