Neorickettsia findlayensis: GP480_02735
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Entry
GP480_02735 CDS
T06378
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nef
Neorickettsia findlayensis
Pathway
nef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GP480_02735 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nef03021
]
GP480_02735 (rpoC)
03400 DNA repair and recombination proteins [BR:
nef03400
]
GP480_02735 (rpoC)
Enzymes [BR:
nef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GP480_02735 (rpoC)
Transcription machinery [BR:
nef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GP480_02735 (rpoC)
DNA repair and recombination proteins [BR:
nef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GP480_02735 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
RnfC_N
YnfE
Motif
Other DBs
NCBI-ProteinID:
QHD65347
UniProt:
A0A6P1GA42
LinkDB
All DBs
Position
complement(595431..599558)
Genome browser
AA seq
1375 aa
AA seq
DB search
MGDFRSFRQSGGGSVDFDGIKISLASADKIRSLSYGEVTKPETINYRTFKPEKNGLFCAK
IFGPTKSYECLCGKYKKIKYSGVICERCGVEVTSSRVRRERMGHIELASPVAHIWFLKSL
PSKICILLDLTLKNVEKVLYFELYIVIDPGVTTFTKHELITDETYMNAVREYGPDSFTAM
IGAEAIRHMLASLDLEKMAVKLRSQAAATNSEVKKKKIIKTLRLVEQFLGSDSRPVDMIL
DVIPVMPPDLRPLVMLDGGRFATSDLNALYRSVINRNNRLKSLIYLKAPNIIINNERRML
QEAVDALFDNGRRAKVIKGSNKRPYKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ALELHQCGLPKKIALELFKPFIYSKLELYGIAPTIKTARRMVQNEQPEVWDVLAKVIHQH
PVFLNRAPTLHRLSVQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMSVHVPLSIEAQVE
ARLLVMSTNNVLNPANSRPIIIPSKDIVLGVYYLSLEEKGDVVHPVTFCAAWEAEYAFGN
GDIRLHTKIRCGVELEGEVKVYTTTFGRLQLFKILPKGVPFESINMVLTVRDISNLVDLV
YRTCGHGKTVEFADGIMELGFRYATLSGISFGKDDMVVPPTKAEHVKRANEEVKEYEFQY
QEGLITKHEKYNKVVDAWQKCTDLVAKDMMDGISGYESVAEMNSIFMMAQSGARGSAAQI
KQLAGMRGLMAKPSGEIIPNPIISNLREGQGVLEYFNSTHGARKGLADTALKTANSGYLT
RRLVDVAQDSIIVEEDCGSSEGLVVRATVEGGVVIIPLSDSIFSRVSAADIIDPSDGSVI
VRAGEMFDYKSIERIESLGIDSVRIRSVLTCTSKHGICRKCYGADLSNRKLVALGEAVGV
IAAQSVGEPGTQLTMRTFHVGGAATRRVENSSMVAFCGGKVKFTNANLITDRDGNYVVLS
RSFEILLIDSLGIEHFQGRVQYGGTVYVKEGEVVPIGKKLADWDLYTVPIIAEASGKVSY
ADMIEGVSYNEVHDESTGILNRMIVDWRQAESSSGLRPRVEILDETGSIATCQQSKDAVY
LLPLGAILSVSNGDVVEAGDVIAKITKESTTTRDITGGLPRVIELFEARKAKVNAVISEI
DGYVEFAKDYYKSKRKVIVRSREDKERIYEYLVPKGRHLIVSEGDFIRKGEPLMDGDPDL
HEILRVLGLEALAEYMISEIQRVYRLQGVKINNKHIEVIIRKMLQKVEITDAGDTTFLIG
EQIDKSRVERINEVMASQGLRCCSYVPILLGITRASLQTESFISAASFQETTKVLTEAAV
AGKVDRLRGLKENIIAGRLLPVGAGYFIDKLKREFTGEQRGKQVSVGVDGDMTSV
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgggagattttaggagttttcgccagagtggtggcggctcggttgattttgatggtatc
aagatttcccttgcgagtgctgataagatacgctctctctcttatggggaagtcaccaag
cctgagactatcaattacaggacgttcaagccagaaaagaatggtcttttttgcgcaaaa
atttttggtccgacgaagagttacgagtgtctttgtggaaaatataaaaagattaagtat
agtggggtaatctgtgagaggtgtggagtagaagttacttcctctagggtacgccgtgag
cgtatgggccatatagaattggctagtcctgttgcacatatatggttcttgaaatctctt
ccatcgaagatttgcatcttgctggatttgacgcttaaaaacgtggagaaggtgctctac
tttgagctatatatagtgatcgatccgggtgttactacatttactaagcacgagctcatc
actgatgaaacctatatgaatgcggttcgtgagtacggtcctgactcgtttactgcgatg
ataggtgccgaggctatcaggcatatgcttgcctcactggatctggaaaagatggcagtg
aaattgcgctctcaagcggctgcaacaaattctgaagtaaagaagaaaaagatcattaag
acgttgcgtctagtagaacagtttcttggatcagatagtaggccagttgatatgattttg
gatgtcataccggtaatgccacctgatcttagaccgcttgtaatgttggatggaggaagg
tttgcgacctctgatttgaatgcattgtacaggtcagtgatcaaccggaacaatagactg
aaaagtctgatctatctgaaagcgcctaatatcatcataaataacgaaaggcgcatgtta
caggaagctgtagatgcactttttgataatgggcgtcgtgcaaaggttattaaaggtagt
aacaagcgcccttacaaatccattagtgatatgcttaagggaaaacaaggtaggttccgg
caaaatctgcttggtaagcgcgtagactactctggaagatccgtgatagttgttggtcca
gctttagagctccaccagtgcggtttgcctaagaaaattgcgctagaattatttaaacct
tttatatactctaaactggagctttatgggattgcgccaacgatcaagactgctcggaga
atggtgcaaaatgaacagccggaagtttgggatgtacttgcaaaggttattcatcagcat
cctgtctttttgaatagagcacctacgcttcataggttgagtgtccaagcattcgagccg
gttctcattgaaggtaaggctatacagttgcacccgttggtttgtactgcttttaacgcc
gattttgacggtgatcagatgtctgttcacgtgcctttgtctattgaggcacaggttgaa
gctaggttgcttgttatgtcgacgaataatgtcctgaatccagcgaattcacggccgatt
attatcccatctaaagatatagtcttaggtgtgtattatctaagcctcgaggagaaagga
gatgttgttcacccggtgactttctgtgctgcatgggaagctgagtatgcttttgggaat
ggtgatattaggcttcacactaaaatcaggtgtggtgttgaactagagggtgaggtcaag
gtttatacaacaacttttggtagattgcagttatttaagattcttccaaaaggcgtgccg
tttgagagtataaacatggtgcttactgttagagatataagcaatctggttgatttggtg
tataggacttgtggtcatggtaaaactgttgagtttgcagacggcatcatggaattgggt
tttcggtatgctacgctttcgggtatttcctttgggaaagatgatatggttgtgccaccg
acaaaagcagagcatgtaaaaagagcaaacgaagaggtcaaggagtacgaatttcagtat
caagagggtttgattaccaaacacgaaaagtacaataaggttgttgatgcatggcaaaag
tgtacagaccttgttgcaaaagacatgatggatggaatttctgggtacgaaagcgttgca
gagatgaattccatttttatgatggcacaatccggtgctaggggttccgccgcgcagata
aaacagcttgctgggatgagaggactgatggccaaaccatctggtgagattatcccgaat
ccgattatatcaaatttgagagaaggacagggtgtgttagagtactttaactctacgcat
ggcgcgcgtaaggggcttgcagatacggcattaaaaactgcgaactctggttatctgact
cgtaggttagttgatgtagcacaggattctattattgttgaggaggattgcggctcctct
gaggggctggtggttcgtgccaccgttgagggcggtgtggtgattataccgctcagtgac
agtatattcagtagggtttctgcagccgatattatagacccatcggatggttccgtgata
gtgcgtgcgggagagatgttcgattataagtctatcgagagaatagagtcgcttggtata
gattcggttcggattcgttcggttctcacatgcacgagtaaacacggtatatgtcgcaag
tgctatggtgcagatctttcgaataggaagttggttgcccttggtgaggcagtaggtgtg
attgctgctcagtcggtaggtgaacctggaacacagctaacgatgagaacattccacgtt
ggtggtgccgcaacgcgcagggtggaaaactcgagtatggtcgcgttttgtgggggtaag
gttaagtttacaaacgcgaacttgatcacggaccgtgatggcaactatgttgtcttaagt
aggtcgtttgagatcttattgatcgattctcttggtatagaacacttccaaggtagggtg
cagtatggtgggactgtatatgtaaaagaaggtgaagtcgttccaattgggaagaagttg
gctgactgggatttgtacactgttccgataatagcagaggcgtccggtaaggtgtcttat
gcggatatgatagagggtgtctcatacaatgaggttcatgatgagagcaccgggatttta
aatagaatgattgttgattggcgtcaggcggagtcttcgtcaggtttgcgtccacgcgtc
gaaatacttgatgaaactggttcaattgcaacgtgtcagcagtccaaagatgcggtttat
ctgctgccgcttggagcaatattaagtgtatcaaatggcgatgttgttgaagctggagat
gtgattgcgaagatcacaaaagagtcaacaacgacacgtgatattactggtggtctacct
cgtgtaatcgagctgtttgaagcgagaaaagctaaagttaatgcggtgattagtgaaatt
gatggttacgtcgaattcgcaaaggattactataaatcaaaaagaaaagttattgtcaga
tctcgtgaagataaagagcgaatttatgagtaccttgtaccaaaaggtagacatttgatt
gttagtgagggcgactttattagaaagggtgagccccttatggatggtgacccggatttg
cacgagatcctcagggtgcttggtttggaagctcttgcggagtacatgattagcgagata
cagcgtgtctacaggttgcagggtgttaaaatcaataataaacacattgaagttataatc
cgtaagatgctacaaaaagttgagatcactgatgctggtgatacaactttcctaattggg
gagcagattgataagtctcgtgtagagcggattaatgaagttatggcatcacaggggttg
agatgctgttcttatgtaccgatcctattgggcattacaagagcaagtttgcaaacagag
tcgtttatttcggcagcatcatttcaggagactactaaggtgttaacagaagctgcagtt
gccggtaaggttgacaggttaagaggtctgaaagagaatatcatagcaggtaggttgttg
cctgttggtgctgggtattttatcgataagttaaagcgcgaatttactggcgagcagcga
ggtaaacaggtatctgttggagtagatggtgatatgacctctgtttag
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