Oecophyllibacter saccharovorans: E3E11_00655
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Entry
E3E11_00655 CDS
T06092
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
neh
Oecophyllibacter saccharovorans
Pathway
neh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
neh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3E11_00655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
neh03019
]
E3E11_00655
Messenger RNA biogenesis [BR:
neh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E3E11_00655
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QDH15897
LinkDB
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Position
complement(152607..154304)
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AA seq
565 aa
AA seq
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MTDKAGSDSAKEKAGEKDGLSFLPLGGTGEIGMNLNLYRLRKDGKNYWLAVDCGIGFSGN
DTPEAEILMPDPAYLESHAKDLCGLVITHAHEDHLGAVAHLWPKLRCPVYATPFAAAVLR
RKLEEAGLLKDVPIHVIQPGSEFEVGPFELEFIPVTHSVVEAQALSIRTPHGVIVHTGDW
KIDPEPLVGPRSHLEKFKQLGDEGVLAMVGDSTNALKEGGSISEAAVRDSLAKLIAGQKK
GRIAVTCFASNVARIDSIARAAKAAGRQVMIVGRSLRNLENAARECGYLADVPQFLTEQE
AGKIDDDKLLMIVTGSQGEPRSALSRIANDAHATINFGEGDTVIYSSRAIPGNEKAVAEV
QDSLTRNGVEVITDREALVHASGHATSEDIRHLYSLVRPKFSIPTHGEWRHLTAHAALAH
EAGSEVVLLEDGDIVDLSEDGVEVVDTAPTGRLALDAGRLLPMTGGVLSARRRMLYNGAV
LASFAVDDEGYVIGEPRISAPGLLEPEDPEVKRIQEDFSRALDEVPDELRMDETAFRDAA
RTALRRALGRKLQKRPLVDVQLLRV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacggacaaagcaggttcggacagcgccaaggagaaggctggagaaaaggacggtctc
tccttcctgccgttggggggcaccggcgagatcgggatgaacctcaatctctaccgcctg
cgtaaggatgggaaaaactactggctggctgttgattgcggcatcggcttttccggcaat
gacacgccggaagccgaaatcctcatgcctgacccggcttatctggaaagccatgccaag
gatctgtgcggcctggtcatcacccatgcccatgaagatcatctgggggctgtggcgcat
ctgtggccgaaactgcgttgcccggtttatgcaacgcccttcgcggcggccgtgctgcgc
cgcaagcttgaggaagccggtctgctgaaagatgtgcccattcacgtcatacagccagga
tctgaattcgaggtcggtccgttcgagctggaattcattcccgtgacgcattccgtcgtg
gaggcgcaggctctgtccatccgcacgcctcatggcgtcatcgtgcatacgggggactgg
aaaatcgacccagaaccgctcgtggggccgcgcagccatctggaaaagttcaagcagctt
ggtgatgaaggcgtgctggccatggtcggcgacagcacgaatgcgctgaaggaaggcggt
tccatctctgaagcggccgtgcgggattcgctggccaagctgatcgccggccagaagaag
ggccgcatcgcggtaacctgctttgccagcaacgtggcgcgtatcgacagcattgccagg
gcagccaaggcggccggccgtcaggtcatgatcgtcggccgctctctgcgcaatcttgag
aatgcggctcgtgaatgcggctatctggcagacgtgccccagttcctcactgagcaggaa
gcaggcaagattgacgatgacaaactgctgatgatcgtgacaggcagccagggcgagccg
cgttcggctctctcgcgcattgccaatgatgcccacgccaccatcaatttcggtgaaggt
gacacggtgatctacagctcgcgtgccatccccggaaatgagaaggcggttgcagaagtg
caggacagcctgacccgcaatggcgtggaagtgattaccgaccgtgaagccctggtccat
gcctccggtcatgcaaccagcgaagatatccgtcatctctacagcctggtgcgcccgaag
ttcagcattcccacgcacggcgaatggcgccacctgaccgcccatgcggcgctcgcccat
gaagcgggctccgaggtggttctgctggaagacggtgacatcgttgacctgtctgaagac
ggggtggaagtggttgataccgctccgaccggtcgtctggcgcttgatgccggccgtctg
ttgccgatgacgggcggcgttctctcggcccgccgccgcatgctctataacggggcggtt
ctggccagcttcgcggttgatgatgaaggctatgtgatcggtgagccgcgcatcagcgcg
ccgggcctgctggagccggaagacccggaagtgaagcggatccaggaagatttctcccgt
gcgctggatgaagtgcctgatgagctgcgcatggacgaaacggcttttcgcgatgccgcc
cggaccgccctgcgccgggctctgggccgcaagctgcagaaacgtccgctggtggacgtg
cagctgctccgcgtctga
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