Oecophyllibacter saccharovorans: E3E11_05100
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Entry
E3E11_05100 CDS
T06092
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
neh
Oecophyllibacter saccharovorans
Pathway
neh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
neh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3E11_05100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
neh03019
]
E3E11_05100
03009 Ribosome biogenesis [BR:
neh03009
]
E3E11_05100
Enzymes [BR:
neh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3E11_05100
Messenger RNA biogenesis [BR:
neh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3E11_05100
Ribosome biogenesis [BR:
neh03009
]
Prokaryotic type
rRNA helicases
E3E11_05100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
AAA_19
PARM
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDH15328
LinkDB
All DBs
Position
1173782..1175758
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AA seq
658 aa
AA seq
DB search
MPFPDTHPALTRALQAKGYENPTPVQAAVLKPDLEKKDLLVSAQTGSGKTVAFGLAAAPT
LLGDKDRLGAPAAPEVLVIAPTRELAGQVRNELQWLYAETGAVIALCIGGTDARREARML
ERGAHIVAGTPGRLCDHLDRKQLDLSKVRVVILDEADEMLDMGFREELEKLLDAAPADRR
TLLFSATIAREIAALARKFQKDAERIDVSSGQKQHSDISYRAVVTPPHEMVPSLVNVLRY
YNAPTAMVFCNTRQMVGEVQKALQERGFASVAISGEMGQNERTRAIESLRSGLAHVCVAT
DVAARGIDVPALGLVIHASVPTSVEALLHRSGRTGRAGRKGTCVLMVPFNQRRRAERLLA
QARIKAEWEPVPTAAQIYAQDARHLLDSPLLSQPAAQSTAPATEEAVSAPAAPVASEGAA
VEHQPADMTAENAPSEQTADHAPAAETETPVPAEGEAAEHHSTETSEPGTVENTLAPTEA
PEDIAEPDELVRELTDHYTAAQLANALVRLYRERLPQVEDVRPVAADAQRGAPADYSTMK
GAWYRIDVGREGKADPKWLIPLICRIGGIQKRDIGSIRIFPTYSLFQVAEDKVARFDSCR
AGADADEPKISPASAPKGGFAPRAGRKPFPPRSPKREPAPRRAPGGLRTGEKSSRRRS
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgccttttcccgatactcatccagccctgacccgtgcccttcaggccaaggggtatgaa
aatcccacccctgtccaggctgctgtcctcaagccggacctcgagaagaaagacctcctg
gtctcggctcagaccgggtcgggaaagaccgtggctttcggtctggctgctgccccgacc
ctgctgggcgacaaggaccgcctcggcgcgccggcagcccctgaagtgctggtcatcgcg
ccgacgcgtgagctggcgggccaggtgcgcaacgagctgcagtggctgtatgcggaaacc
ggtgcagtgatcgccctgtgcattggcggcacggatgcccgtcgcgaggcgcgaatgctg
gagcgcggcgcgcatatcgtggccggaacgcccggccggctttgcgaccatctcgaccgc
aagcagcttgatctctccaaagtgcgcgtggtcattctcgacgaagccgatgaaatgctc
gacatgggcttccgcgaagagctggagaagctgctcgacgccgcgcctgccgaccgccgc
accctgctgttctcggccaccatcgcgcgtgaaattgcggccttggcccgcaagttccag
aaagacgccgagcgtattgacgtctccagcggccagaagcagcactccgacatttcctat
cgcgccgtcgtaacgccgcctcatgagatggtgccttcgctggtcaacgtgctgcgttac
tacaatgcgcccacggccatggttttttgcaacacgcgccaaatggtcggtgaagtgcag
aaggccctgcaggaacgcggtttcgcttcggtggcgatttccggcgagatgggacagaac
gagcggacgcgcgccatcgagagcctgcgttcaggcctggcccatgtctgcgtggcgacc
gacgtggccgctcgcggcattgacgtgccggccctggggctggtcatccacgccagcgtt
ccgacctctgtcgaagccctgctgcaccgctcgggccgcacggggcgtgcaggccgcaag
ggcacctgcgtgctcatggtgcctttcaatcagcgccgccgcgccgaacgcctgctggcc
caggcccgcatcaaggcggaatgggagccggtgcccactgctgcccagatctacgcgcag
gatgcccgccacctgctcgacagcccgctgctttcccaaccggctgcacagagcaccgcg
cctgccacggaggaagccgtctctgctccggccgcaccagtggcttctgaaggggcggct
gttgagcaccagcctgcggacatgacggctgaaaatgccccttccgaacagactgctgac
catgcccctgcagccgaaactgaaacccctgtcccggcagagggggaagctgctgagcat
cacagcacggaaacgtctgaacccggcacggtggaaaacacgctggcacccaccgaggcg
cctgaggatattgccgagcctgatgagctggtgcgtgagctgacggatcattacacagct
gcccagcttgccaatgcgctggtgcgcctgtaccgcgagcgcctgccgcaggtggaagat
gtccggcctgtcgccgctgatgcccagcggggtgcgcctgccgattacagcacgatgaag
ggcgcctggtaccgcatcgatgtggggcgtgagggaaaggctgatccgaaatggctcatc
ccgctcatctgccgcatcggggggatccagaagcgcgatatcggcagcatccgcattttc
cccacctattccctgtttcaggtcgctgaagacaaggtggcgcgctttgattcctgccgc
gccggggcagatgctgatgagcccaagatctcacccgcttccgcgccgaaaggggggttc
gctccccgtgccggccgcaagcctttccccccccgctctcccaagcgcgagcctgcgccc
cgtcgtgcgccgggtggtttgagaacaggcgagaaatccagccgtcgccgcagctga
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