Neisseria sp. KEM232: CGZ77_04335
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Entry
CGZ77_04335 CDS
T05913
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nek
Neisseria sp. KEM232
Pathway
nek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CGZ77_04335 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nek03400
]
CGZ77_04335 (mfd)
Enzymes [BR:
nek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGZ77_04335 (mfd)
DNA repair and recombination proteins [BR:
nek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CGZ77_04335 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
PT-HINT
Hint_2
ERCC3_RAD25_C
Intein_splicing
Hint
UB2H
AAA_30
Glyco_tran_WecG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASP17038
LinkDB
All DBs
Position
871189..875397
Genome browser
AA seq
1402 aa
AA seq
DB search
MTHPLPTKSAPRVRWLNLTAGSLPYFLTQNLPPKTLKIVFTPDAESALRLQTAWQFFRPQ
DNALFLPDWETLPYERFSPHQDLVSERLSVLWQLKNGLADVLFVPVATAMQKLPPVPFLA
GRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDL
FDDEIDSIKTFDPDSQRTIAPVSEIRLLPAHEFPTDDAAQKIFRSRFREEVNGNPNAAAV
YKAVSGGQFGAGVEYYLPLFFEGGCATLFDYIGGDALAVCVGDVHAEARRFEAEVKSRFQ
MAQGDETYPPLPPQHLYLAADQFSGCLKAYPQILPELGGAAFALPNVAVNRQAEQPLQAL
QDFQAAFEGRILLCAESLGRRETMLGFLQQNGLKAKPVSDWQAFLNDDAPLCITVTSLTH
GFQLPFDAAECLPNSHACFVAGTLVHTDKDLVPIDQIKVGDMVLSRDENNPDGENAYKRV
LSTFKSAEKQRIIYQSYITEDGYGYLFCTEDHPFWADRLIDQEIDIDENGRKILHREPVG
WTPALELEGTERHFLRTFDDILVGVGTFEDSAKLLGTAFPDPDCQVVLLYNPSDAAGIID
FSAGRPVIVDDETLGLLLPTEECSDTLMTEKSRAMSENFKAAIKDADRSYIGGYHQEYHD
YVYNIEVEDYHTYFVGHTGIWVHNCAPSTTERAVNAIALITESDLYQYVAKSRSSTRRKK
HAAVSDGLLRDLAEISIGDPVVHEEHGIGRYMGLVSMDLGGEAQEMMLLEYAGEAQLYVP
VSQLHLISRYSGAAHENVQLHKLGSAAWNKAKRKAAEKARDTAAELLNLYARRAAQEGYK
FQFDEEGYRAFADGFGYEETEDQAAAIAAVIADLTQARPMDRLVCGDVGFGKTEVALRAA
FVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVAQLSRFNSSKETRATLAGMADG
TVDIVIGTHKLVQDNISFKNLGLVIIDEEHRFGVRQKEQLKKLRANVDILTLTATPIPRT
LSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTI
ENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANT
IIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFT
LAMQDLEIRGAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGVTTEI
KLHSPALLPEGYCPDIHERLVLYKRLATCETEAQINAVHEELVDRFGLPEQPVTTLLESH
RLRLAAKALGITAIDASSDALTLTFGKHTMVEPADIILLMQSNKNYRMAGADKLRVSAVM
EDIETRIKTVRAVLRKLANKET
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgacccacccccttcccacaaaatccgccccgcgcgtgcgctggctgaaccttaccgcc
ggcagcctgccgtattttttaacacaaaacctgccgcccaaaacgctgaaaatcgtgttt
acgcccgatgcggagagtgcgttgcggctgcaaacggcgtggcagtttttccgaccgcag
gacaacgcgctgtttctgcccgactgggaaacgctgccctatgagcgtttttcgccgcat
caggatttggtgtcggagcggctgtcggtgttgtggcagctgaaaaacggtttggcggat
gtgttgttcgtaccggttgccacggcgatgcagaagctgccacccgtgccgtttctggcg
gggcgcacgttttggctgaaaacggggcagactttggatataggccgtctgaaaaccgat
ttggtggatgcgggttacaaccatgtttcccatgttgtcgcggcgggtgagtttgccgtg
cgcggcgggattgtcgatttattcccaatgggcagcgagatgccataccgcatcgatttg
ttcgacgatgaaatcgacagcatcaaaacctttgaccccgacagccagcgcaccatcgcg
cccgtatcggaaatccgcctgctgcccgcgcacgagtttcccaccgacgatgcggcgcaa
aaaatcttccgcagccgtttccgcgaggaagtgaacggcaatccgaacgcggcggcggtg
tacaaagccgtgagcggcgggcagtttggcgcgggggtggaatattatctgccgctgttt
tttgaagggggctgcgcgacgctgtttgactacatcggcggcgacgcgctggcggtgtgc
gtgggcgatgtgcacgccgaggcgcggcggtttgaggcggaggtgaaatcgcgtttccag
atggcgcagggcgacgaaacctatccgccgctgccgccgcagcatctgtatttggcggca
gaccagttttcaggctgcctgaaagcctatccgcagattctgcccgagctgggcggcgcg
gcgtttgcgttgccaaatgtggcggtgaaccgccaagccgagcagcctttgcaggccttg
caggattttcaggctgcctttgaaggacggattttgctgtgcgccgaaagtttgggacgg
cgcgaaaccatgctcggcttcttgcaacaaaacggcttgaaggccaaaccggtgtccgac
tggcaggcgtttttgaatgacgatgcaccactgtgcatcacagtaacgtcattgacacac
ggttttcaactgccgttcgatgcagcggaatgccttcccaacagccatgcctgctttgtg
gcgggcacactggtgcatactgacaaagaccttgttcccatcgaccaaatcaaagtcggc
gatatggtcttgtcgcgcgatgagaataaccccgacggcgaaaacgcctacaagcgcgta
ctttccaccttcaaatcggcagaaaaacagcggattatttatcagagttatattacagaa
gacggatatggctatctgttctgcaccgaagaccacccgttttgggcggacaggctgatt
gatcaagagattgatattgatgaaaacggtaggaaaatactgcaccgcgaaccggtaggc
tggacacctgcgctggaattggaaggaacggaacgtcattttttacgaacatttgatgac
attctggttggtgttggtacatttgaagattctgcaaaattattaggcactgcctttccc
gaccccgactgtcaagttgttcttctgtataatcccagcgatgcagctggtatcattgat
tttagtgcggggcggcctgtgattgttgatgatgaaactctcggccttctattgcccacc
gaagaatgcagcgatacgttgatgacggagaaaagccgtgccatgtcggagaattttaag
gcggctattaaagatgctgacaggtcttatattggtggataccatcaggaatatcacgac
tatgtttataacattgaagtggaggactatcacacttattttgtcggtcatacgggtatt
tgggtgcacaactgcgccccatccaccacggagcgggctgtaaacgccatcgccctcatc
accgaatccgatctctaccaatacgtcgccaaaagccgcagcagcacgcgccgcaagaag
catgccgccgtttcagacggcctgttgcgcgacctggccgaaatcagcatcggcgacccc
gttgtccacgaagaacacggcatcgggcgctatatgggcttggtgtctatggacttgggc
ggcgaagcgcaggagatgatgttgctcgaatacgcaggcgaagcgcagctttatgtgcct
gtttcgcaactacatttaatcagccgctactccggcgcggcgcatgaaaacgtgcagctg
cacaagctcggcagcgcggcatggaacaaagccaagcgcaaggccgccgaaaaagcccgc
gacaccgccgctgagctgctcaacctttacgcccgccgcgccgcgcaggaaggctacaaa
ttccagtttgacgaagaaggctaccgcgcctttgccgacggcttcggctacgaagaaacc
gaagaccaagccgccgccatcgccgccgtgattgccgatttaacccaagcgcgcccgatg
gacaggttggtgtgcggcgacgtgggcttcggcaaaaccgaagtcgccctgcgcgccgcc
tttgttgccgtgatgggcggcaaacaagtcgccgtgctcgccccgaccacgctgctggta
gaacagcacgcgcagaatttcgccgaccgctttgccgatttccccgtgaaagtcgcccag
ctttcgcgcttcaacagcagcaaagaaacccgcgccacgctcgcaggcatggcagacggc
acggtggacattgtcatcggcacgcataagctggttcaggacaatatttcttttaaaaac
ctaggcttggtgattatcgacgaagaacaccgcttcggcgtacgccaaaaagagcagctg
aaaaaactacgtgccaacgtcgatattctcaccctcaccgccacgccgattccgcgcaca
ttaagcatggcattggaagggctgcgcgacttctcgctgattaccaccgcccccagccgc
cgccttgccgtgaaaacctttgtcaaaccgtttagcgaaggcagcgtacgcgaagccgtg
ttgcgcgaactcaaacgcggcgggcaggtatttttcctgcacaatgaagtagataccatc
gaaaacatgcgcgagcggctggaaaccctgttgcccgaagcccgcatcggcgtggcgcac
ggacaactgcgcgagcgcgagttggagcaagttatgcgcgactttttgcagcaacgattc
aacgtgttgctctgttccaccatcatcgaaaccggcatcgacatccccaacgccaacacc
atcatcattaaccgcgccgacaaattcggactggcgcaactgcaccagcttcgcgggcgc
gtcggccgcagccaccaccaagcctacgcctacctgctaacgcccgaatacatcaccaaa
gacgcagaaaaacgcctcgacgccattgcggcggcagacgaactcggcgcaggtttcacc
ctcgccatgcaggatttggaaatccgcggcgcaggcgaaatcctcggcgaaggacaatcc
ggcgaaatgatacaggtcggcttcacgctctacaccgaaatgctcaaacaagccgtgcgc
gacctcaaaaaaggccgccagcccgatttggacgcgccattgggcgtaaccaccgaaatc
aagctgcacagccccgccctgctgcccgagggctactgccccgacatccacgaacggctg
gtactctacaaacgcctcgccacctgcgaaaccgaagcccaaatcaacgccgtgcacgaa
gaactggttgaccgcttcggactgcccgaacaacccgtaaccaccctgctggaaagccac
cgcctgcgccttgccgccaaagccttgggcatcaccgcgattgatgcttcatccgacgcg
ctcacgctcaccttcggcaaacacaccatggtcgagcctgccgatattattctgctgatg
cagagcaataaaaattatcgtatggcgggcgcggacaagctgcgcgtgagcgcggtgatg
gaagacatcgaaacacgcatcaaaaccgtgcgcgccgtattgagaaaactggcgaacaaa
gaaacctag
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