Neorhizobium sp. NCHU2750: NCHU2750_12950
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Entry
NCHU2750_12950 CDS
T05650
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nen
Neorhizobium sp. NCHU2750
Pathway
nen03030
DNA replication
nen03430
Mismatch repair
nen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCHU2750_12950 (dnaE)
03430 Mismatch repair
NCHU2750_12950 (dnaE)
03440 Homologous recombination
NCHU2750_12950 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nen03032
]
NCHU2750_12950 (dnaE)
03400 DNA repair and recombination proteins [BR:
nen03400
]
NCHU2750_12950 (dnaE)
Enzymes [BR:
nen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCHU2750_12950 (dnaE)
DNA replication proteins [BR:
nen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCHU2750_12950 (dnaE)
DNA repair and recombination proteins [BR:
nen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCHU2750_12950 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF655
Motif
Other DBs
NCBI-ProteinID:
AYD00686
LinkDB
All DBs
Position
1341476..1344970
Genome browser
AA seq
1164 aa
AA seq
DB search
MAEQANTGSADENLGATPQFVHLRLHSAYSLLEGALPLKKVLGKAVADNQPAIAITDTNN
LFVALEFAQKSIYDGLQPIIGCQLSIDMQDQGDERRANQQLAKLPAIVVLAATADGYERL
VDLVSRAYLGGEGSSETHICASWLDEAGTDGLIALTGAASGPVDRAMRDGHAELALARLE
RLKGLFGDRLYLELQRHGGYDRRHEQRMVDLAYTHDVPLVATNEAFFPTKADYDAHDALM
AVAHGAIVSDDSRFRLTPDHYLKSRAEMAKLFADLPEALENTVEIAQRCSFILKTRAPIL
PRFTGVSDHPEEDERKEAAELRRQAVEGLDMRLQALGMAAGFEEKDYRERLEFELSIIER
MKFPGYFLIVADFIKWAKQHNIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNP
ERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYG
QVDKICKMVPNNPANPTPLSKAIEEDPKFQEEAEKEPVVARLLDIAQKIEGLYRHASTHA
AGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFC
RKRGIEVDLATIPLDDKLTYEMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVAL
YRPGPMENIPTYNARKHGEEEIESVHPSIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGE
ADLLRRAMGKKIKEEMDKQSERFVDGAVKNGVSKPQAKNIFELLAKFANYGFNKSHAAAY
AIVSYQTAYMKAHYPVEFLAATMTYDMANSEKLNDFREDAGRLGIKVIPPSVQTSFRHFE
TGEAKIYYALAAIKGVGESAVEHITEVRGDKPFAGIEDFCMRVDPKQINRRVLESLISAG
AFDCFGHDRAQLIAGLDRVIGYAQRAQEERVSGQSDFFGSSASSGPEKLILPTFNPWMPS
EMLMREYQVLGFYLSAHPLDTYKDVLAKLRVQTFADFAAAVRQGATAGRLAGTVTGRQER
KTKTGNKMGIITFSDSSGQFEAVLFSEALAQYRDLLEPGKSLVITVQADERPEGIGLRIQ
TAQSLEEQSVRMQKALRVFVRDSGPLKTVARHLNARGEGLVSFIVIKEDGRREIEVELTE
RYRLSPEMAAALKAAPGVLDVELV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacaggcaaatacgggatcggcggacgaaaatctcggggcaaccccgcaattc
gttcatctgcgcctgcattccgcctattctctgctggaaggcgcgcttcccctcaagaag
gttctgggaaaggccgttgcggacaatcagcccgcgattgccatcaccgataccaacaat
ctcttcgtcgcgctcgaattcgcccagaagtcgatctatgacggattgcagccgatcatc
ggttgccagctgtcgatcgacatgcaggatcagggcgacgagcgaagggcaaaccagcag
ctcgccaagctgccggccatcgttgttcttgcggcgaccgccgatggctatgagcggctg
gtcgatctcgtcagccgtgcctatctcggtggcgagggatcgagcgaaacccatatctgc
gcctcctggctggacgaggccggcaccgatgggctgatcgcgctgacgggggccgcatcc
gggccggtcgacagggcgatgagggacggtcatgccgaactcgcgcttgcccgtctcgaa
cggctgaaaggtctcttcggcgaccggctctatctcgaactgcagcgccatggcggctat
gaccgccggcacgagcagcgcatggtcgatctcgcctatacgcatgacgtgccgctggtt
gccaccaacgaggccttcttccccaccaaggccgattatgatgcccatgatgcgctgatg
gccgtcgcccatggcgcgatcgtctccgacgacagccgtttccgcctgacgccggaccat
tacctgaaaagccgcgccgagatggcgaagctgtttgccgacctgcccgaggcgcttgaa
aacactgtcgagatcgcgcagcgttgctccttcatcttgaagacccgcgcccccatcctg
ccgcgtttcaccggcgtcagtgaccatccggaagaggacgagcgcaaggaggcggccgaa
ttgcgccgccaggcggtcgagggcctcgacatgcggcttcaggccctcggcatggcggca
ggcttcgaggaaaaggattaccgcgagcgcctcgaattcgagctgtcgatcatcgagcgg
atgaagtttcccgggtacttcctcatcgttgcggacttcatcaaatgggccaagcagcac
aatattccggtcgggccggggcgcggttcgggtgcgggttctctcgtcgcctatgcgctg
acgatcaccgacgtcgatccgctgcgcttctcgcttctgttcgaacgcttcctcaatccc
gaacgcgtctcgatgcccgatttcgacatcgacttctgccaggatcgccgtgaagaggtg
atccgctacgtgcagcgcaaatatggccgcgagcaggtggcgcagatcatcaccttcggt
tcgctgcaggcgcgcgctgcccttcgcgacgtcggccgcgtgctcgaaatgccctatggc
caggtcgacaagatctgcaagatggtgcccaacaatccggccaacccgacgccgctgtcc
aaggcgatcgaggaagacccgaaattccaggaggaggccgaaaaggagccggtcgtcgcc
cggcttctcgatatcgcccagaagatcgaaggcctctatcgccacgcctcgacccatgcc
gccggcatcgtcatcggcgaccggccgctgtcgaagctggtgccgatgtatcgcgatccg
cgctccgacatgccggtcacccagttcaacatgaaatgggtggaacaggcagggctggtg
aaattcgacttcctcggcctgaaaacgctgaccgtgttgaagacggcggtggatttctgc
cgcaagcgcggcatcgaggtcgatctggcaacgatcccgctcgacgacaagctgacctat
gagatgctgtcgcgcggcgagacggtcggcgtgttccaggtggaaagtgccggcatgcgc
aaggcactgatcggcatgcggcccgactgtatcgaggatatcatcgcgctcgtggcgctc
tatcgcccgggtccgatggaaaacatcccgacctacaatgcccgcaagcatggcgaggag
gagatcgaatcggtccatccctcgatcgactatctgctcaaggaaacccagggcgttatc
gtctatcaggaacaggtgatgcagatcgcccaggtcctgtcgggctattcgctcggcgag
gcagaccttctgcgtcgcgccatgggtaagaagatcaaggaggagatggacaagcagagc
gagcgcttcgtcgatggtgccgtcaagaacggcgtctccaagccgcaggcgaagaacatc
ttcgagcttctggccaaattcgcaaactacggcttcaacaagtcgcacgccgcagcctac
gccatcgtctcctaccagacggcctatatgaaggcgcattatccggtcgagttcctcgcc
gcgaccatgacctacgatatggccaattcggaaaagctcaacgatttccgcgaggatgcc
gggcgcctcggcatcaaggtcattccgccttcggtgcagacctcgttccgccatttcgag
accggcgaagcgaagatctattatgcgcttgcggccatcaagggcgttggtgaatcggcc
gtcgagcatattaccgaggtgcgcggcgacaagccctttgccggcatcgaggatttctgc
atgcgcgtcgatcccaagcagatcaaccgccgtgtgctggaaagcctgatctccgccggc
gccttcgactgtttcggccatgaccgcgcccagctgattgccggcctcgaccgggtgatc
ggctatgcccagcgcgcccaggaagagcgcgtctccggccagtccgatttcttcggttca
tctgcctcgagcgggccggaaaagctcatcctgccgacattcaatccgtggatgccgtcg
gaaatgctgatgcgcgaatatcaggttctcggcttctatctgtcggcccatccgctcgat
acctacaaggatgtgcttgccaagctgcgcgttcagacctttgccgattttgccgcagcc
gtgcgtcagggagccaccgccgggcgtttggccggcaccgtcaccggtcgccaggagcgc
aagaccaagaccggcaacaagatgggcatcatcacgttctcggattcgtccgggcaattc
gaggctgtattgttttccgaggcgctggcccagtatcgcgatcttctggagcccggaaaa
tcgctggtcatcaccgtccaggccgatgaacggccggaaggcatcggtctgcgcatccag
actgcccagtcgctggaagagcagtcggtgcgcatgcagaaggcgctgcgcgtcttcgtg
cgcgattccgggccgctcaaaaccgtcgcgcgccatctcaatgcgagaggcgagggcctc
gtctccttcatcgtcatcaaggaggacggccggcgcgagatcgaggtggaactgaccgag
cgctaccgcctttcaccggaaatggcagccgccctgaaggcggcacccggcgtactcgac
gtcgagcttgtgtga
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