Neorhizobium sp. NCHU2750: NCHU2750_28580
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Entry
NCHU2750_28580 CDS
T05650
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nen
Neorhizobium sp. NCHU2750
Pathway
nen03420
Nucleotide excision repair
nen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCHU2750_28580 (uvrD)
03430 Mismatch repair
NCHU2750_28580 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nen03400
]
NCHU2750_28580 (uvrD)
Enzymes [BR:
nen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCHU2750_28580 (uvrD)
DNA repair and recombination proteins [BR:
nen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCHU2750_28580 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NCHU2750_28580 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
Peptidase_M2
AAA_30
AAA_12
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AYD02243
LinkDB
All DBs
Position
2923919..2925988
Genome browser
AA seq
689 aa
AA seq
DB search
MSVAYLEKLNEAQRRAVEHGSDVPNGGPAGPLLVIAGAGSGKTNTLAHRVAHLIVSGADP
RRILLMTFSRRAATEMGRRVERICKQVLGANAGIMTDALAWAGTFHGIGSKLLRLYAYQI
GLDPDFTIHDREDSADLMNLVRHELGFSKMESRFPTKGTCLAIYSRAVNSETPLDEVLKN
WFPWCQAWEKQLRELFASYVEAKQAQNVLDYDDLLLYWAQMMDEPSIAEDVGARFDHVMV
DEYQDTNRLQSSILMGMKPGGRGLTVVGDDAQSIYSFRAATIRNILDFPKTFDPPANIVT
LDRNYRSTSTILAAANGVIELARERFTKNLWTDRQSEERPRLVTVKDEAEQANYIVEKVL
ENRETGMTLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAALRFA
QNPRDRVAGFRLMQLIPGIGPQTAGKILEAIATDPEPLAALQEIPAPPRSGSDWGAFVEM
LAAIRQSEGWPADIGTAREWYEPHLERVHEDAETRKSDLLQLEQIASGYASRERFLTELT
LDPPDATSDQAGVPLLDEDYMILSTIHSAKGQEWRSVFLLNCVDGCIPSDLGVGSTAEIE
EERRLLYVAMTRAKDHLHVITPQRFFVHGQHSQGDRHVYAARTRFIPATLLQFFETSAWP
VVAPMSDAERQHRQQVRIDVTARMRGMWR
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcgcctatctggaaaaactcaatgaggcccagcgccgggccgtggaacatgga
tcggatgtgccgaatggcggccctgccggccccctcctcgtcatcgccggcgccggttcc
ggcaagaccaatacgctcgcccatcgcgtcgcccacctgatcgtctccggtgccgatccg
cgccgtatcctgctgatgaccttttcccgccgcgccgcgaccgaaatgggtcgccgcgtc
gagcgcatctgcaaacaggttctgggcgccaatgccggcatcatgaccgatgcgctcgcc
tgggccggcacattccacggcatcggctccaagcttttgcgcctctacgcctaccagatc
ggcctcgacccggatttcaccatccacgaccgggaggattccgccgacctgatgaacctc
gtgcgccacgaactcggcttctccaagatggaaagccgtttcccgaccaagggcacctgc
cttgccatctattcccgtgcggtcaattccgaaacgccgctggatgaagtcctgaagaac
tggttcccctggtgccaggcctgggaaaaacagctgcgcgagcttttcgcatcctatgtc
gaggccaagcaggcgcagaacgttctcgattacgacgatctgcttctctactgggcgcag
atgatggacgagccgtcgatcgccgaagatgtcggcgcccgcttcgaccatgtcatggtc
gacgaataccaggataccaaccggctgcagtcatccatcctgatgggcatgaaaccgggc
ggacgcggcctcaccgtcgtcggcgacgacgcccagtcgatctattccttccgtgccgcg
acgatccgcaacattctcgatttcccgaagacattcgatccgccggccaatatcgtcacg
ctcgaccgcaactatcgctcgaccagcaccatccttgcggccgccaacggtgtgatcgag
ctcgcccgcgagcgcttcaccaagaacctctggaccgaccggcagtctgaagagcgcccg
cgcctcgtcaccgtcaaggatgaggcggaacaggccaactatatcgtcgagaaggtgctg
gaaaaccgcgagactggcatgactttgaaacagcaggccgtgctgtttcgcgcctcgcac
cattccggcccgctggaagtggaactgacccgccgcaacattcccttcgtcaagttcggc
ggcctgaaattcctcgacagcgcccatgtcaaggacatgctggcggcgctgcgttttgcc
cagaacccgcgcgaccgcgtcgccggcttccggctgatgcagctgatccccggcatcggc
ccgcagaccgccggcaagatcctggaggcgatcgccaccgatccggaaccgcttgcagcc
ctgcaggaaatcccggctccgccgcgttccggttccgactggggcgcctttgtcgagatg
ctcgccgcgatccgccagagcgaaggctggccggctgacatcggcacggccagagaatgg
tacgagccgcatctcgaacgcgtccacgaggatgccgagacccgcaagtcggatctgttg
cagctcgagcagatcgcctccggctatgcctcgcgcgaacgtttcctcaccgaactgacg
ctcgacccgccggacgcgacgagcgatcaggccggcgtgcctttgctcgacgaggattac
atgatcctctcgaccatccattcggccaagggccaggaatggcgctcggtcttcctgctg
aactgcgtcgatggttgcataccgtccgatctcggtgtcggctcgaccgcggagatcgag
gaggagcgtcgcctgctttacgtggcgatgacgcgcgccaaggatcatctccacgtcatc
accccgcagcgctttttcgtccacggacagcattcacaaggggacaggcatgtctatgcc
gcccgcacccgcttcattccggcaacgcttctgcagttcttcgagacctcagcttggccg
gtggttgcaccgatgtccgatgccgaacgccagcaccgccagcaggtgaggatcgacgtc
accgccaggatgcgcggcatgtggcgttag
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