KEGG   Neorhizobium sp. NCHU2750: NCHU2750_37200
Entry
NCHU2750_37200    CDS       T05650                                 
Symbol
rho
Name
(GenBank) transcription termination factor
  KO
K03628  transcription termination factor Rho
Organism
nen  Neorhizobium sp. NCHU2750
Pathway
nen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCHU2750_37200 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nen03021]
    NCHU2750_37200 (rho)
   03019 Messenger RNA biogenesis [BR:nen03019]
    NCHU2750_37200 (rho)
Transcription machinery [BR:nen03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     NCHU2750_37200 (rho)
Messenger RNA biogenesis [BR:nen03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     NCHU2750_37200 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 NACHT DUF6360 AAA
Other DBs
NCBI-ProteinID: AYD03105
LinkDB
Position
complement(3904392..3905657)
AA seq 421 aa
MAEMKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKVLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTSKDLSARVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNGDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaagaactcaagagcaaatctccgactgatttgctgaccttc
gcagagtcgctggaggtcgaaaacgccagcacgatgcgcaagcaggagctgatgtttgca
atcctgaaggttctggcaagtcaggatgtggagatcattggcgagggcgtcgtcgaagtt
ctgcaggacggtttcggcttccttcgttcggccaacgcgaactaccttccgggcccggac
gacatctatatttctccctcgcagatccgccgcttctcgctgaagaccggcgacacggtg
gaaggtccgatccgcggcccgaaggaaggcgaacgctatttcgccctgctcaaggtcaat
acgatcaatttcgacgatccggagaagatccggcacaaggttcatttcgacaatctgacg
ccgctttatccgaacgagcgcttcaagatggaactcgacatcccgacgtcgaaggatctg
tctgcccgcgtgatcgacctggtggcgccgctcggcaagggtcagcgcggtctgatcgtt
gcgcctcctcgcacgggtaagaccgtgctgttgcagaatatcgcccattcgatcacggcg
aaccatccggaatgctatctgatcgtgcttttgatcgacgaacgcccggaagaagtgacg
gacatgcagcgctcggtgaagggcgaagtggtttcctcgaccttcgacgaacccgcagtg
cgtcacgtgcaggtcgctgagatggtgatcgagaaggcaaagcgccttgtcgagcatggg
cgtgatgtcgttatccttctcgactcgatcacccgtctcggtcgcgcctataacacggtc
gttccgtcttccggcaaggttctgaccggtggtgtggatgcgaatgcgctgcagcggccg
aagcgtttcttcggtgccgcgcgcaatattgaagagggcggttcgctgacgatcatcgcg
acggcactcatcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggt
accggcaactccgaaatcgtgctcgaccgcaaggttgccgacaagcgcatcttcccggcg
atggacattctcaaatccggcacgcgtaaggaagacctgcttgttccgcgccaggatctg
cagaagatcttcgtgctccgccgtattctggcaccgatgggcacgaccgacgcaatcgaa
ttcctcatcgacaagttgaagcagaccaagaacaatggtgacttcttcgactcgatgaat
acgtaa

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