Neorhizobium sp. SOG26: CYG48_05235
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Entry
CYG48_05235 CDS
T05626
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
neo
Neorhizobium sp. SOG26
Pathway
neo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
neo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CYG48_05235 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
neo03021
]
CYG48_05235 (rpoB)
03400 DNA repair and recombination proteins [BR:
neo03400
]
CYG48_05235 (rpoB)
Enzymes [BR:
neo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CYG48_05235 (rpoB)
Transcription machinery [BR:
neo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CYG48_05235 (rpoB)
DNA repair and recombination proteins [BR:
neo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CYG48_05235 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Trp_halogenase
Motif
Other DBs
NCBI-ProteinID:
AXV15155
LinkDB
All DBs
Position
1043396..1047532
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVTEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK
SVFPITDFSGASMLEFVSYEFEPPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVSSLLMALGMDGEEILSTFYTKSIYQR
DGDGWRIPFQAETLKGAKTLSDMIDADTGEVVVEAGKKLTPRLLRQLTEKGLKALKATDD
ELYGNYLAEDIVNMETGEIYLEAGDEIDEKTLPIILKAGFDEIPVLGIDHINVGAYIRNT
LAADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDPERYDLSAVGRVKMNMRLD
LQVEDTVRVLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGKVTNDVLYLSAMEEAKYYVAQANAPLEADGSFSEEFVVCRHAGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDASKSGVDIYRLQKFQRSNQNTCVNQRPLV
AVGDVLNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLLDMLRGQVSVAGPKGFKKGVELSNAVVSEYPRSQWW
MFAVEDEKVQGEIEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
WACAGMGKKIGELLEEYRKTQDITDLKRELTEVYASQARDEVSTFDDESLVRLAEQSKRG
VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEAFDRKVTVGYMYMIKLNHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKLEAAEAGQLPDAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgtttaatggtcgtaggcgcgtacgcaagttttttggaaaaatc
cccgaagtcacggagatgccgaacctaatcgaggttcagaaggcgtcttatgaccagttc
ttgatggttgacgaaccgaagggcggccgccctgatgaaggtctgaatgccgtcttcaag
tccgtattcccgatcaccgatttctccggcgcttccatgctggaattcgtgtcctacgaa
ttcgagccgccgaagttcgacgtcgaggaatgccgtcagcgcgacctgacctatgctgcg
ccgctcaaggtgacgctgcgcctgatcgtgttcgatatcgatgaggataccggcgcgaag
tccatcaaggacatcaaggaacagtccgtctacatgggcgacatgccgctcatgaccgac
aacggtacgttcatcgtgaacggcaccgagcgcgttatcgtgtcccagatgcaccgttcg
ccaggtgtgttcttcgaccacgacaagggcaagagccattcgtccgggaagctgctgttc
gccgctcgcgtcattccgtatcgtggttcgtggctcgatatcgaattcgacgcgaaggac
atcgtgttcgcccgtatcgaccgtcgccgcaagatccccgtgagctcgctgctcatggcg
ctcggcatggacggtgaagaaatcctgtcgaccttctacacgaagtcgatctaccagcgt
gacggcgacggctggcgcatccccttccaggccgaaaccctgaagggcgccaagacgctg
tccgacatgatcgacgccgacaccggcgaagtcgttgtcgaagccggcaagaagctgacc
ccgcgtctcctgcgtcagttgaccgaaaagggcctgaaggctctcaaggccaccgatgac
gagctctacggcaactaccttgccgaagacatcgtcaacatggaaaccggtgagatctac
ctggaagcaggcgacgagatcgacgagaagaccctgccgatcatcctgaaggctggcttc
gacgagattccggttctcggcatcgaccacatcaatgtcggcgcctacatccgcaacacg
cttgccgctgacaagaacgagaaccgccaggacgctctgttcgacatctaccgtgtcatg
cgtccgggtgaaccgccgaccatggaatcggctgaagcgatgttcaactcgctgttcttc
gatccggagcgttacgacctctccgccgttggccgcgtcaagatgaacatgcgcctcgac
ctgcaggttgaagacaccgttcgcgttcttcgcaaggaagacatcctggccgtggtcaag
atgcttgtcgaactgcgcgacggcaagggcgagatcgacgacatcgacaacctcggcaac
cgtcgtgttcgctcggttggtgaattgatggagaaccagtatcgcctgggtctgctgcgc
atggagcgcgccatcaaggaacgcatgtcgtccatcgagatcgacaccgtgatgccgcag
gacctgatcaacgcgaagccggctgctgccgccgttcgcgagttcttcggttcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgccgtctt
tcggctcttggaccgggtggtctgacccgcgagcgcgcaggcttcgaagtccgcgacgtt
cacccgacccactacggccgtatctgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgcttgcaaccttcgcccgcgtcaacaagtacggcttcattgaaagcccg
taccgcaagatcgtcgacggcaaggtcaccaacgacgtgctttacctctccgccatggaa
gaagccaagtactacgttgcgcaggcaaacgcgccgcttgaggccgacggttcgttctcg
gaagagttcgtggtttgccgccacgccggcgaagtgatgctcgctccgcgcgacaacatc
aacctgatggacgtctcgccgaagcagctcgtttcggttgcagcggctctcatcccgttc
ctggaaaacgacgacgccaaccgcgccctcatgggctccaacatgcagcgtcaggccgtt
ccgctggttcgtgccgaagcgccgttcgttggtaccggtatggagccggtcgtggctcgc
gactccggtgctgccattgctgcccgtcgtggcggcgtggtcgaccaggtcgatgcaacc
cgtatcgtcatccgcgcaacggaagacctcgatgcttcgaagtctggcgtcgacatctat
cgcctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctggtc
gccgtcggtgacgttctgaataagggcgacatcattgcggacggtccgtcgaccgacctc
ggtgacctggctctcggccgcaacgcgctcgtcgcgttcatgccgtggaacggctacaac
tacgaagactcgatcctgatgtcggaacgtatcgttgcggacgacgtgttcacctccatc
cacatcgaagaattcgaagtgatggcgcgtgacaccaagcttggtccggaagaaatcacg
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggcatcgtg
tacatcggcgccgaagtccagccgggcgacatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcatcc
gacgttcgcgacacgtccatgcgcatgcctccgggcacgttcggtaccgtcgtcgaagtt
cgcgtattcaaccgtcacggcgtcgaaaaggacgagcgtgcgatggccatcgagcgcgag
gaaatcgaacgcctcgccaaggaccgcgacgacgaacaggcgatcctcgaccgtaacgtc
tacggccgtctgctcgacatgcttcgcggccaggtctcggttgcaggtccgaagggcttc
aagaagggcgtcgagctgtccaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgtttgccgtcgaggacgaaaaggtccagggcgagatcgaagctctgcgtggccagtac
gacgaatccaagtcgcgccttgaacagcgcttcatggacaaggtcgagaaggtccagcgc
ggtgacgaaatgcctccgggcgtcatgaagatggtcaaggtctttgtcgctgtgaagcgc
aagatccagccaggcgacaagatggccggccgtcacggcaacaagggtgttgtatcgcgt
atcgttccgatcgaggacatgccgttcctcgaggatggcacgcatgtcgacatctgcttg
aacccgctcggcgttccgtcgcgcatgaacgttggtcagattcttgaaacccatcttgca
tgggcatgcgcaggcatgggcaagaagatcggcgaattgctcgaggaataccgcaagacg
caggacatcaccgacctgaagcgcgagctgacggaagtgtatgccagccaggcccgcgac
gaagtttcgacttttgacgacgagtccctggttcgtcttgccgaacagtccaagcgcggc
gtgtcgattgcgacgccggtcttcgacggtgcacatgagccggacgttgcagccatgctg
aagaaggcgggtctgcatgagtcgggtcagtcggtcctctacgacggacggactggcgaa
gccttcgaccgcaaggtcacggttggctacatgtacatgatcaagctgaaccacctcgtg
gacgacaagatccacgcgcgttcgatcggtccgtactcgcttgttacccagcagccgctg
ggcggtaaggcgcagttcggtggccagcgcttcggcgaaatggaggtctgggctctggaa
gcctatggtgccgcctacacgctgcaggaaatgctgaccgtgaagtcggacgacgtggct
ggtcgtacaaaggtctacgaagcgatcgtccgtggcgacgacaccttcgaagcgggcatt
ccggagagcttcaacgttctcgtcaaggaaatgcgctcgctgggcctgtcggtggagctc
gagaactcgaagctcgaagcggcggaagccggccagctgccagacgcagcggaataa
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