Neorhizobium sp. SOG26: CYG48_05240
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Entry
CYG48_05240 CDS
T05626
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
neo
Neorhizobium sp. SOG26
Pathway
neo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
neo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CYG48_05240 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
neo03021
]
CYG48_05240 (rpoC)
03400 DNA repair and recombination proteins [BR:
neo03400
]
CYG48_05240 (rpoC)
Enzymes [BR:
neo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CYG48_05240 (rpoC)
Transcription machinery [BR:
neo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CYG48_05240 (rpoC)
DNA repair and recombination proteins [BR:
neo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CYG48_05240 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AXV15156
LinkDB
All DBs
Position
1047713..1051921
Genome browser
AA seq
1402 aa
AA seq
DB search
MNHEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFIESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDMGELHHALE
NKVVTLHAKIKGRFKTVDAEGKPVSKIYETTPGRMIIGELLPKNVNVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFTHACKAGISFGKDDMIIPDSKHKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEDMMARIKAVEFDPETGRQKQMNAIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNMVDCGTEKGLTMTAIVDAGQVVASLGARILGRT
ALDNIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEVQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDSSFLEASYEGTIQIKNRN
MLRNSEGVLVAMGRNMAVTILDERGVERSSQRVAYGSKLHVDDGDKVRRGQRLAEWDPYT
RPMMTEVAGTVQFEDVVDGISVSESTDESTGITKRQVIDWRSTPRGADLKPAIVIKDASG
AIAKLSRGGEARFQLSVDAILSVEPGQKVSQGDVLARIPMESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELEDTNDQLIEEGKKPAYGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKMDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERKK
GSGVGSATPMLQDMNSENTPAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatgaggtcatgaatcttttcaacccccaagtgcctgcgcagcacttcgactcg
atccggatttcgatcgcgtcgcccgagaagattctctcctggtcctacggcgaaatcaaa
aagccggagaccatcaactaccgcacgttcaagccagaacgcgacggcctcttctgcgcg
cgcattttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtgacgctgtcgcgcgttcgccgt
gagcgcatgggtcacatcgagcttgcagctcctgtggcgcacatctggttcctgaagtcg
cttccgtcgcgcatctcgacccttctcgacatgacgctgaaggatgtcgagcgcgttctg
tatttcgagaactacatcgtcaccgaacctggcctgacctccctgaaggaaaaccagctt
ctttccgaagaagaatacatgatcgccgtcgacgagttcggcgaagatcagttcacggcg
atgatcggtgctgaagccatctacgagatgctggcatcgatgaatctcgaaaagattgca
ggcgacctgcgttccgagcttgccgacaccacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgaaaacttcatcgagtccggcaatcgcccggaatggatgatc
atgaaggtcgtgcccgtgatcccgccggacctgcgtccgctggttccgctcgacggcggc
cgctttgcgacctccgacctgaacgacctttatcgtcgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgaactgcgcgctccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatctgtagacgcgctgttcgacaacggccgtcgtggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttc
cgccagaaccttctcggcaagcgcgtcgactattccggccgttcggttatcgtgaccggt
ccggaactgaagctgcaccagtgcggtcttccgaagaagatggcgctcgagctcttcaag
ccgttcatctacgcccgtctcgacgcaaagggttattcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
ccgatcctggttgaaggcaaggccatccagctgcatccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcacagctc
gaagcacgcgtgctgatgatgtcgacgaacaacatcctgcatccggcgaacggcgcaccg
atcatcgttccgtcgcaggacatggttctcggcctctactacctgtcgatcatgaaccag
aacgagccgggcgagggcatggccttctccgacatgggcgaactgcaccacgctctggaa
aacaaggtcgtcacgcttcacgccaagatcaagggtcgcttcaagaccgttgacgccgaa
ggcaagcctgtttcgaagatctatgagaccacgccgggccggatgatcatcggcgagctt
ctgccgaagaacgtcaacgtgccgttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcactgcggacagaaggacacggtgatcttc
tgcgaccggatcatgcagcttggcttcacgcacgcctgcaaggccggtatctccttcggc
aaggatgacatgatcatccccgacagcaagcacaagatcgtcggcgacaccgaagccctg
gtgaaggaatacgagcagcagtacaacgacggcctgatcactcagggcgagaagtacaac
aaggtcgttgacgcctggggtaaggctaccgaaaaggttgccgaggacatgatggcccgc
attaaggccgttgagttcgatccggaaaccggtcgtcagaagcagatgaacgccatctac
atgatgtcccactcgggtgcccgtggttcaccgaaccagatgcgccagctgggcggcatg
cgcggcctgatggcgaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctaaccgttaacgagtacttcaactcgacgcacggtgcccgtaagggtctg
gcagacaccgccttgaagaccgcgaactccggttacctgacccgtcgtctcgtcgacgtc
gcgcaggactgcatcgtcaacatggtcgattgcggcactgaaaagggcctgaccatgacg
gcgatcgttgacgccggtcaggtggttgcttcgcttggcgcacgtatcctgggtcgtacg
gctctcgacaacatcgatcatccggtcacgggtgagcgtatcgtcgacgccggcaagatg
atcctggagccggacgtcatcgagatcgagaaggctggcatccagtcgatccgcatccgc
tctgctctgacctgcgaagttcagacgggtgtttgctcggtctgctacggccgcgacctt
gcacgcggtacgccggtcaacatgggtgaagccgttggtgttatcgcggcacagtccatc
ggtgagccgggtacccagctgaccatgcgtacgttccaccttggtggtacggcaaacgtg
gtcgactcctcgttcctggaagcctcctatgagggcacgatccagatcaagaaccgcaac
atgctgcgcaactctgagggcgttctcgtcgcgatgggtcgtaacatggcggtcaccatt
ctcgatgagcgtggtgtcgagcggtcgtcccagcgcgtggcctacggctccaagctgcac
gtcgatgatggcgacaaggtacgtcgcggtcagcgtctggcagagtgggacccgtatacc
cgcccgatgatgacggaagtcgccggtacggttcagttcgaagatgtcgtcgacggtatc
tccgtttcggaatcgaccgacgagtcgaccggtatcaccaagcgccaggtcattgactgg
cgttcgaccccgcgcggtgcggatctcaagccggcaatcgtcatcaaggacgcttccggt
gcgatcgccaagctgtcacgtggtggcgaagctcgcttccagctctcggtggatgcgatc
ttgtcggtcgagccgggtcagaaggtttcccagggcgacgtgcttgcacgtatcccgatg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgcgtcgcagaactgttcgaa
gctcgtcgtccgaaggaccacgccatcatcgctgagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgtcgcgtcatgattgagccggcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccatcttcaggatggcgactacatcgaa
aagggcgactacatcctcgacggcaatcctgcgccgcacgacatcctggcgatcaagggc
gtggaagcactcgcttcctacctcgtgaacgaaatccaggaagtctaccgtctgcagggc
gttgtcatcaacgacaagcacatcgaagtgattgttcgtcagatgctgcagaaggtcgag
atcaccgatgctggcgacagccaatacatcgtcggtgacaatgtcgaccggatcgagctg
gaagacaccaacgaccagctcatcgaggaagggaagaagcctgcatacggcgagccggtt
ctgcttggtatcaccaaggcctcgctgcagacgccgtccttcatctcggctgcatccttc
caggagaccaccaaggttctcacggaagctgcgatcgccggcaagatggacacgctgcag
ggtctgaaggaaaacgtcatcgtcggccgtctcatcccggccggtacgggcggaaccatg
actcagatccgccgcatcgccacttcgcgcgacgacctcatcctcgaggagcgcaagaag
ggttcgggcgttggctcggccaccccgatgctgcaggacatgaactcggaaaatacgcct
gccgagtaa
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integrated database retrieval system
