Neorhizobium sp. SOG26: CYG48_07025
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Entry
CYG48_07025 CDS
T05626
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
neo
Neorhizobium sp. SOG26
Pathway
neo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
neo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYG48_07025 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
neo03400
]
CYG48_07025 (mfd)
Enzymes [BR:
neo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYG48_07025 (mfd)
DNA repair and recombination proteins [BR:
neo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CYG48_07025 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_16
UB2H
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXV15471
UniProt:
A0A346YLX4
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All DBs
Position
1383683..1387192
Genome browser
AA seq
1169 aa
AA seq
DB search
MISGFDAKKIAASSVPMIIGGVPTGMEPMVLAELVRAGQSVAYVMSDGQKLLDLEQMLSF
VAPEIPVLTLPAWDCLPYDRVSPSADVSARRLSALSGLISHAKKPHAAIVLITVNAMLQK
IAPAEVIESLAFSARPGNQIRMDDIAARLERNGFERVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLETIRSFDPASQRTTGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETAFDYLKGFRIVTDHNAREAASERSKL
VLDYFEARRDSGSQGKGLTAQATPYKPVSPGQLYLDAKAFGDALDEAGALRLTPFNEMDA
EARRVVTVDAHVGPRWAKAQAERTDSDERTNVFDLVVKHIADKRAAGSKVLVTGWSAGSL
DRLLQVLDERGLKRIRQIDKLADLNKLEKGEAAAAVLSLEGGFETGDLVVIGEQDILGDR
MVRRGKRRKRAADFLTEVAGLDEGSLVVHAEHGIGKFVGLVTIEAAGAPRACLELHYADQ
AKLFLPVENIDLLSRYGSDAAEAQLDKLGGGAWQARKAKLKKRLLDMAGDLIRIAATRMV
RRAPVLSTPEGLYDEFAARFPYDETEDQENAIESVREDLAAGRPMDRLVCGDVGFGKTEV
ALRAAFFAAMNGAQVAVVVPTTLLARQHFKTFSERFRGLPIKIAQASRLVSAKELAQTKK
DVAEGKVDIVVGTHALLGAGIQFANLSLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCP
RLADLPEIQAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKQLTVTAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGESDIVDTGW
SPQISVGITVMIPENYVPDLHLRMGLYRRLGELEDLQEIDGFGAEMVDRFGPMPVEVQNL
LKVVYIKSLCRTANVEKLDAGPKGVVVTFRDKQFPNPAALVGYIAKQGVMAKIRPDQSVF
LNRDLPTPEKRLTVAAQIMKQFAELAKAS
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgatctccggattcgatgcaaagaagatcgcggcctcctcggtgccgatgatcatcggc
ggcgtgccgaccggcatggagccgatggtgctcgccgagctggtgcgggccggtcagtcg
gtggcctacgtcatgtcggatggccagaaactcctcgacctggagcagatgctgtccttc
gtcgcgccggaaataccggtgctgacgctgcctgcctgggactgcctgccttacgaccgc
gtgtcgccgagcgcagatgtctccgcccggagactttctgccctttcggggctgatctcg
cacgcgaagaagccgcacgcggcgatcgtcctgatcaccgtcaacgccatgctgcagaag
atcgcgccggcggaggtgatcgagagcctggcgttctccgccaggcccggcaaccagatc
cggatggacgatattgccgctcggctggagcgcaacggctttgagcgcgtcgcgacggtt
cgggaggtcggtgagttcgccgttcgcggtggtatcctcgacgtgttcgttcccggcaca
gaggagccggtgcggctcgatttcttcggcgatacgctcgagacgatccgctccttcgat
ccggcgagccagaggacgacagggcaggcccgctcactcgatctcaacccgatgagcgaa
gttacgttgacgccggatacgatcagccgtttccgcaagaactatctgtcgctctttgga
gccgcgacgcgcgacgacgcgctgtaccaggctgtctccgaaggacgccgttatgccggc
atggagcactggctgccgctgttctacgatcggctggaaactgcattcgactacctcaag
ggctttcgcatcgtcaccgatcacaatgcccgcgaagcggcgagtgagcgatcgaagctg
gtgctcgattacttcgaggcgcgtcgggattctggctcgcagggcaagggcctgacggcg
caggcgacaccctacaagccagtctcgccggggcaactctacctcgatgccaaagccttt
ggcgacgcgctggatgaggcgggcgcgctgcggctcacgccattcaacgagatggacgct
gaagcacgccgcgtcgtgaccgttgatgcccatgttggtccgcgttgggccaaggcccag
gccgagaggacggatagcgacgagcgcaccaatgtctttgacctggtggtgaagcatatc
gccgacaaacgtgccgcgggcagcaaagtgcttgtcaccggctggtccgcaggatcgctc
gaccgcctgctgcaggtgctggacgagcgcggccttaagcggatccgccagatcgacaag
ttggctgacctcaacaagctcgaaaagggcgaggcggccgccgccgtgctgagcctggaa
ggcggtttcgaaaccggtgacctcgttgtcatcggtgaacaggacatcctcggcgaccgc
atggtgcgccgtggcaagcgccgcaagcgcgcggcggacttcctgaccgaggtggcgggt
ctcgacgaaggctcgcttgtcgtgcatgccgagcatggtatcggcaagttcgtcggcctg
gtcacgatcgaagcggccggcgcgccgcgcgcctgccttgagcttcattacgccgaccag
gccaagctcttcctgccggttgaaaacatcgaccttctgtcgcgttatggctccgatgcc
gccgaagcccaacttgacaagttgggcggtggtgcttggcaggcccgcaaggcaaagctg
aagaagcgcctgctcgacatggcaggtgacctcatccgcattgccgccacccgaatggtg
cggcgtgccccggtgctgtcgacgccggaagggctctatgacgagtttgcggcacgcttc
ccttatgacgaaacggaagatcaggaaaacgcaatcgaatcggtccgcgaagacttggcg
gccggacgcccgatggaccgcctggtgtgcggcgacgtcggtttcggcaagaccgaggtg
gcgttgcgtgctgccttcttcgcggccatgaatggtgcgcaggtagcggtggttgttccg
acgacgctgctggcccgccagcatttcaagaccttcagcgaacgtttccgcggcctgccg
atcaagatcgcccaggcatcgcgcctggtctcggccaaggagctcgcgcaaaccaaaaaa
gatgtcgccgaaggtaaggtagacatcgttgtcggcacgcatgcgctgcttggcgcgggc
atccagttcgccaatctaagcctgctgatcatcgacgaagaacagcatttcggcgtaaag
cacaaggaacggctgaaggagctgaagagcgacgtgcatgtgctgacgctttcggcaacg
ccgatcccgcgcacgctgcagcttgccatgacaggggtgcgggagctctccctcatcacc
acgccaccggtggaccgcatggcggtgcgcaccttcatctcgcctttcgacccgctggtg
atccgcgaaacgttgatgcgtgagcactaccgtggcggacagagtttctacgtctgcccg
cggctcgccgacttgccggaaatccaggccttccttcaatcggatgtgccggaactgaag
gttgccgtcgcacacggccagatggccgctggcgaactcgaagacatcatgaacgccttc
tacgacggcaaatatgatgttctgctttcgacgacgatcgttgaatcaggtctggatgta
cccacggcaaatactctgattgtgcaccgtgccgacatgttcggtttggcgcagctctac
cagctgcgtggccgcgtcggccgttcgaaggtgagggcgtttgccctcttcaccctgccg
gtgaacaagcagctgactgtcacggcggaacgccgcctcaaggtgctccagtcgcttgac
acgttgggcgccggtttccagctcgccagccacgacctcgatatccgcggtgccggcaac
ctgcttggcgaagagcagtccggtcacatcaaggaagtcggcttcgagctctatcagcag
atgctggaagaagcggtcgccgaggtgaagggcgagagcgacatcgtcgacaccggctgg
tcgccacagatctccgtcggcatcacggtaatgatccccgaaaactacgtgccggacctg
catctgcgcatgggcctctaccgccggcttggcgagctcgaggacctgcaggaaatcgat
ggtttcggtgccgagatggtcgaccgctttggaccgatgccggtcgaagtccagaacctg
ctcaaggtcgtctacatcaagtcattgtgccgcacggccaatgtcgaaaagctggatgca
gggccgaagggtgtggtcgtcactttccgcgacaagcagttcccgaacccggccgcactg
gttggttacatcgccaagcagggcgtgatggccaagattcgcccggaccagagcgtcttc
ctcaaccgcgatcttccgacaccggaaaagcggctgacggttgccgcccagatcatgaag
cagttcgccgagctcgcgaaggcgagctag
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