Neorhizobium sp. SOG26: CYG48_09940
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Entry
CYG48_09940 CDS
T05626
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
neo
Neorhizobium sp. SOG26
Pathway
neo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
neo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYG48_09940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
neo03019
]
CYG48_09940
Enzymes [BR:
neo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYG48_09940
Messenger RNA biogenesis [BR:
neo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CYG48_09940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Snf7
Utp25_C
HEM4
Cas3-like_C_2
AAA_22
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AXV17359
UniProt:
A0A346YSB2
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All DBs
Position
2005562..2007268
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AA seq
568 aa
AA seq
DB search
MTNFESLGVSKQIVATLTALGIETPTPIQAQAIPLLLEGRDLIGLAQTGTGKTAAFGLPL
VERLLADNIRPDNRTTRSLILAPTRELVNQIAANLKNYIKGRPLKVNLVVGGVSINKQQL
QLEKGTDILVATPGRLLDLISRRAIGLTTVRYLVLDEADQMLDLGFVHDLRKIAKIVPKR
RQTMLFSATMPKAIADLASEFLTDPVKIEVTPPGKAADKIEQYVHFVAGKNDKTQLLKDT
LKANPDGRAIVFLRTKHTAEKLYKHLEQVEFKVASIHGNKSQGQRERALKAFRDGDIRVL
VATDVAARGIDIPGVTHVFNYDLPEVPDAYVHRIGRTARAGREGVAIAFCAPDETLLLRD
IEKLMGIEVTTASGERPEALSRPVRGNNNRGGNKARGGNRGGGNARQGAGRGEGEGRPQR
RERPARKPFFAAEGAEGASAEAGARPQRQENRNGGRPQGDRPQRDQRRNEDFRGQRRGED
APRAEADSDLASTSDFRGGKKQFGPRDGAPNGEGRPARSEHRKPAGQARTAAKQGENRGP
VRFGNDNRAENRTDNRGGGYQGRKRSRA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaatttcgaatcgcttggcgtttccaagcagattgtcgccacgctgaccgcgctt
ggcatcgaaacaccgacccctatccaggcacaggccattccgctgctgctcgaaggccgc
gacctgatcggcctcgcccagaccggcaccggcaagaccgccgcattcggcctgcctctg
gttgagcgcctgctcgccgacaacatccgccccgacaaccgcacgacccgctcgctgatc
ctggcgccgacgcgcgaactggtgaaccagatcgctgcgaacctcaagaactacatcaag
ggccgcccgctgaaggtgaacctcgttgtcggcggcgtatcgatcaacaagcagcagctg
cagctggaaaagggtaccgacatcctggttgccacgcccggccgcctgcttgacctgatc
agccgccgcgccatcggcctcacgaccgtgcgttacctcgtgctcgacgaagccgaccag
atgctcgacctcgggttcgtgcatgacctgcgcaagatcgccaagatcgtgccgaagcgc
cgccagaccatgctgttttcggccaccatgccgaaggcgattgccgatctggcctctgaa
ttcctcaccgatccggtgaagatcgaagtgacgcctccgggcaaggctgccgacaagatc
gagcagtatgtccacttcgttgccggcaagaacgacaagacgcaactgctcaaggatacg
cttaaggccaatccggatggccgcgccatcgtcttcctgcgcaccaagcacaccgccgaa
aagctttacaagcatctcgagcaggtcgagttcaaggttgcctccatccacggcaacaag
agccagggccagcgcgaacgcgccctcaaggccttccgtgatggcgacatccgcgttctc
gtggcaaccgacgttgccgcccgcggcatcgacattcccggcgtgacgcatgtcttcaac
tacgacctgccggaagtgccggacgcctacgtccaccggatcgggcgcaccgcgcgtgcg
ggtcgtgaaggtgttgcgatcgccttctgcgcaccggatgaaacgctgctgctgcgcgac
atcgaaaagctgatgggcatcgaagtgacgaccgcctctggcgagcgtccggaagccctg
agccgtccggttcgcggcaacaacaatcgcggtggcaacaaggctcgcggcggaaaccgt
ggcggcggaaacgcgcgccagggtgccggccgtggtgaaggcgagggccgtccgcagcgt
cgcgaacgtccggcccgcaagccgttctttgcggcagagggcgcggaaggtgcatcggca
gaagccggtgcccgcccgcagcgccaggaaaaccgcaatggcggtcgtccgcaaggtgat
cgtccgcagcgcgaccagcgccgcaacgaggatttccgcggccagcgccgtggcgaagat
gcaccacgtgccgaagcagatagcgatctcgccagcacctcggacttccgtggcggcaag
aagcagttcggtccgcgcgacggtgcaccgaatggcgaaggccgtccggcccgtagcgaa
caccgcaagccggccggccaggctcgtactgctgcgaagcaaggcgagaaccgcggcccg
gtccgttttggcaacgacaaccgcgccgaaaatcgcaccgacaaccggggtggcggctac
cagggtcgcaagcgcagccgcgcataa
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