Neorhizobium sp. SOG26: CYG48_17095
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Entry
CYG48_17095 CDS
T05626
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
neo
Neorhizobium sp. SOG26
Pathway
neo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
neo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYG48_17095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
neo03400
]
CYG48_17095
Enzymes [BR:
neo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYG48_17095
DNA repair and recombination proteins [BR:
neo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CYG48_17095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UvrB_inter
AAA_30
SecA_DEAD
AAA_25
AAA_16
Cas3-like_C_2
TraI_hel_assoc_N
Motif
Other DBs
NCBI-ProteinID:
AXV17559
UniProt:
A0A346YSW2
LinkDB
All DBs
Position
unnamed2:105011..108331
Genome browser
AA seq
1106 aa
AA seq
DB search
MESVVASRDEKTTAPPAAAEEKRSPKSPPGFVATRLVTLLQESEQPLCYIARSESAAARI
AEAIAALFPELEQLVLPPWDCLPYDRVPPSRHCMGVRMDALRIWKTSSDTPRLLLTSVEA
ALQRVPPMGVITDSRMELAVGEPFDREAFSSFTQRTGYVEEGVADDPGELVVREGGVIDI
YPGGAPGPMRIVLSEDDKVKELRGFDRVSQRTESYLERVTIGPASEAIPSDGVMDELASK
QETMERVLLRLYQDMPSVFNLLGDAKVLLAPDADERVGRYLEIIGDAYQSRQSFGETETS
ASRSIYLDREEWGRCVGKSANVLALAAGELSVAPADGDPRRALAKFARESMAEGRTVVVA
GRSNGSSTLFRRLAKAAGTEARTVDRWEQVLEAKPGSLLKLSCDLNEGFIDPERNIVVLT
AAGGIRTKGSQNRLLTEPELQIGDVVVHEDHGVGVLKDLESITVEDAARDAARLEYRDNG
SVLVPMEDFGKLWRYGSEPEAVTLDRLHTDAWAKKREKMAADIQSTARHLLKLAKQRLDA
QAQTFVPPRAAFSAFIRRFPFTETQDQAEAVEAVLSDLASGRPMNRLVCGDVGFGKTEIA
LRAAAAVALSGGQVVLIAPTTVLARQHFTTFRRRFAETGVEVGMLSHLLKSSEAKEVKTA
LAEGRMGVVVGTQALLAKDVQFANLSLLIVDEEHRFGVKEKRAMTKLAPTLHTLIMSATP
IPQTLQSAMMGIQEVSLLTTAPARRRPIRTSLADFDQASMRTGLMREYRRGGQSFVVVPR
IEDIEEVEAILRKIVPELSVKVAHGKMRAAEIDEVIVGFAEGDGDILLATSIIENGLDVP
RANTMFVWHADRFGLAQLHQLRGRVGRGAAQGVATLLTEAGAELAEETRLRLSTLVEHDR
LGAGLAISLRDLDLRGGGDIAGEDQAGHMKVIGTGLYQQLLAAAVAKLRKQPVVSQERPI
LNLGNVGTIPTDYVSDPAVRLNLYGRLLRASKLREINDLEEEFEDRFGEPPQDVLLLLRT
TRLQVVAARLGITKLEAGPKALAMTLTLKTPSRAITALTKKGKGVRREDRLIFEQAYQDS
DEQIRFFEKIMSGVSGAAKGSADRTI
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcgttgttgcgtcccgagatgaaaaaaccacagcaccgcctgccgccgccgaa
gagaaacgaagcccgaagtcgcctccgggcttcgtagcaacccggcttgtcaccctgctt
caggagtcggaacaaccgctttgttatattgcgcggagcgaaagtgctgctgcgaggatt
gccgaggccatcgcggctctttttcccgagctcgaacaacttgttctgccgccatgggac
tgcctaccgtatgatcgcgtgccgccatcgcggcattgcatgggcgtgcgcatggacgcg
ttgcggatctggaaaacgtcgagcgacacaccgcgcctcctgctgacttcggtggaagca
gcacttcaacgggttccgccgatgggcgtcatcacggatagccggatggagcttgccgtg
ggagagccgttcgatcgggaggctttttccagcttcacccaacggaccggatatgtggaa
gaaggcgtcgccgacgatcctggcgaattggttgtgcgcgaaggcggcgtgatcgacatc
tacccaggtggcgcgccaggcccgatgcggattgtcctgtccgaggacgacaaggtcaag
gaattgagaggttttgaccgggtctcgcaacggacagaaagttatctggagcgggtaacc
atcggtcctgcctcggaagccattccgagtgacggtgtcatggacgaactggcgtcaaaa
caggagacgatggagcgcgtgcttctgcgcctctaccaggacatgccgtctgtcttcaac
ctgttgggcgatgcgaaagtgcttcttgcgccggatgcggacgagcgggttggtcgatat
ctcgagatcatcggggacgcttaccagtcccgccagagcttcggcgaaaccgagacctcc
gcctctcgatcgatctacctcgatcgtgaggaatggggtcgatgcgtcggcaaatcagca
aatgtattggcacttgcggcaggagagctgtcggtggcgccggccgacggtgatccacga
agggcattagccaagttcgctcgcgaaagcatggccgaagggcgcacggtcgtggttgcc
gggaggagcaacggctcaagcacgcttttccggcgccttgcgaaggccgcggggacagag
gctcgaaccgttgatcgatgggagcaggtgctcgaggcaaagccgggaagcctgctgaag
ctatcgtgcgatctgaatgagggtttcatcgatccggaacggaacatcgtggttctcacc
gcggccggtggtatcaggacaaagggcagccagaacaggctgctcaccgaacccgaactt
cagatcggcgatgtcgttgttcatgaagaccacggcgtaggcgttctgaaggatcttgaa
agcatcacggtggaggacgctgcacgagatgccgctcgcctggaatatcgcgacaacggc
tccgtgcttgtgcccatggaggacttcggcaaactgtggcggtacgggtcggaacccgag
gccgtcacgcttgatcgcctccataccgacgcctgggcgaagaagcgggagaagatggcc
gccgatattcagtccaccgcgcggcatctgctgaagctggccaaacagcggctggacgcg
caggcgcaaactttcgtgccgccgcgtgcggcattctccgctttcatccgccgcttcccg
tttacggagacgcaggatcaggcggaggcggtcgaggctgttctttccgatctggcttcc
ggtcgcccgatgaaccgcctggtctgcggagatgttggcttcggcaagaccgaaattgca
ctacgcgctgccgcagccgttgcactttccggcggacaggtggtgctgatcgcaccaacc
actgtgctggcccgccagcacttcaccacgttccggcgtcgctttgcggagacgggcgtt
gaggttggcatgttgtctcacctgctcaagtccagcgaagccaaggaggtgaagacggcg
ctcgccgaaggccggatgggcgttgtcgtgggaacgcaagcgcttcttgcaaaggacgtc
cagttcgccaacctgtctttgctgatcgtggatgaggaacatcggttcggggtaaaggaa
aagcgggcgatgacgaagctcgcgcccacccttcacacgctcatcatgtcagcgacgccg
ataccgcagacattgcaatcggcgatgatgggaattcaggaggtaagcctcctgacaacg
gctccagcgaggcgcaggccgatccgcacctcactcgccgattttgaccaggcctccatg
cggaccggcctgatgcgcgaatatcggcgcggtggacagagcttcgttgtcgtgcctcgc
atcgaggatattgaggaggttgaggcgatcttgcggaagatcgtccctgaactttccgtc
aaagtcgctcatggcaagatgcgggcggcggagattgatgaggtcatcgttggttttgcc
gagggcgatggcgacatcctgctcgccaccagcattatcgaaaacggcctcgacgtgccg
cgcgccaacacgatgttcgtctggcatgccgaccgcttcgggctcgcgcaacttcatcag
ttgcgcggccgcgtcggccgcggcgcggcacaaggcgtcgcgacgttgttgaccgaagca
ggagccgaactggctgaagaaacacggctgcggctttcgacacttgttgaacatgatcgc
ctgggggcgggtcttgcgatcagcctccgcgacctggacctgcgcggcggcggggatatc
gcaggagaggatcaggccgggcacatgaaggtgatcggcacgggcctctaccaacagttg
ctcgctgctgcggtggcaaagttgcgcaagcagcccgtggtcagccaggaacgacccatc
ctgaacctcggcaacgtgggaaccatacccaccgattacgtttcggacccggcggtaaga
ctgaacctttatggccggctgctgcgggcgtccaaactgcgcgagatcaacgacctggaa
gaagagttcgaggaccggtttggcgagcccccgcaggacgtgctgcttctgttgcgtaca
acgaggctgcaagttgtcgcagcacggttaggcatcacaaagctggaagccggtccgaaa
gcacttgcgatgacgctgacactcaagacgccctctagggccatcaccgctctgacgaag
aagggcaaaggcgtgcggcgggaagaccggctcatcttcgagcaggcgtaccaggatagc
gacgaacagatccggtttttcgagaagatcatgtccggcgtgagcggagccgccaaaggg
agtgcggacagaacgatctag
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