Nanoarchaeum equitans: NEQ078
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Entry
NEQ078 CDS
T00152
Name
(GenBank) NEQ078
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
neq
Nanoarchaeum equitans
Brite
KEGG Orthology (KO) [BR:
neq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
neq03016
]
NEQ078
Enzymes [BR:
neq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NEQ078
Transfer RNA biogenesis [BR:
neq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NEQ078
Prokaryotic type
tRNA splicing ligases
NEQ078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAR38934
UniProt:
Q74MJ0
LinkDB
All DBs
Position
72158..73591
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AA seq
477 aa
AA seq
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MDIKLRKIDKYIWEIPKEGKMNVPVRIYASDKLIEKMKEDRTLIQARNVSMLPKIVKHMV
VMPDGHEGYGPPIGGVGAFSLDNPPVIPGFVGFDINCGVRLLRTNLTIDEIKDRLNLLVN
EIFRNVPAGVGEGGKLKLSIDELNKVLDYGVNWAIDNGFGWEEDRNRIESHGYLDFADSD
AVSNTAKQRGKDQLGTIGSGNHFLEIQVVDQIYDEEIAKAFGIYEKNQVTVLIHTGSRGL
GHQVASDYLRLFEKKYKYDVPDRELIYAPYDSKDAQNYLKAMAAAANFAWANRQLITYWV
RKSFEKVLRKNIESIGLEIVYDLAHNIAKFEEHTIDGKKQKLIVYRKGATRAFPPGHKEL
WGEYKKYGQPVIIPGSMGTASYLLVGQPKAMELSFGSSAHGAGRQLSRVKAKKLYSYSEV
IRKLREMGIIVKSTTKTGVLEEIPEAYKDIDEVVRVTHELGISKIVARFRPVAVIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggatataaagcttagaaaaatagataagtatatttgggagataccaaaagaaggcaaa
atgaatgttccagttagaatatacgctagcgataaacttatagaaaaaatgaaagaagat
agaacattaatacaagcaagaaatgtatcgatgttgcctaaaatagttaaacacatggta
gtaatgccggatggccatgaggggtatggcccaccaattgggggggtaggagcttttagc
ttggacaaccccccagtaatacctggcttcgttggttttgatataaattgtggggtaagg
ctattaagaacaaatctaactattgatgaaataaaggacaggttaaatttattggtaaat
gaaatatttagaaatgttcctgctggtgtaggcgaaggggggaaactaaagctctctatt
gatgaactaaacaaagttttagactatggagtaaactgggcaatagataatggctttggt
tgggaagaagataggaatagaatcgaaagccatggttatttggattttgccgattctgat
gcggtatctaatactgctaaacaaaggggtaaagaccaattaggcactataggttctgga
aatcatttcctagaaatacaagtagtagaccaaatttacgatgaagagatagctaaagct
tttggaatatatgaaaaaaatcaggttacagttttaatccataccggtagtagggggtta
ggccaccaagtggcatcggactatttaagattgttcgagaaaaaatacaaatatgatgtg
ccagatagagaattaatttatgcaccatatgatagtaaagatgcacaaaactatctaaaa
gcgatggccgctgcagctaattttgcttgggcaaatagacaattaattacctattgggta
aggaaaagctttgaaaaagtattaaggaaaaatatagaatcaataggtttagaaatagtt
tatgatttggcccataacatagcgaagttcgaagagcatacaatagatggcaaaaaacaa
aaacttatagtttatagaaagggtgcaactagagcatttcccccagggcataaagaattg
tggggcgaatacaaaaaatacggccaacctgtaataataccaggttcaatgggaacagct
tcttatctattggtaggacaaccaaaagcgatggaactatcttttggttcttctgctcat
ggtgctgggagacaattatctagagtaaaggctaaaaagctatattcttattctgaagta
ataagaaaactaagagaaatgggaataatagttaaatcaacaacaaaaactggagtatta
gaagaaatacctgaagcatacaaagatatagacgaagtagtaagggtaacccacgaattg
ggaataagcaaaattgttgcaaggtttagaccagtagcagtaattaaaggatga
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