Nereida sp. NH-UV-3: NeNHUV3_17820
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Entry
NeNHUV3_17820 CDS
T11315
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ner Nereida sp. NH-UV-3
Pathway
ner03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ner00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NeNHUV3_17820 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ner03019
]
NeNHUV3_17820 (pnp)
03016 Transfer RNA biogenesis [BR:
ner03016
]
NeNHUV3_17820 (pnp)
Enzymes [BR:
ner01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NeNHUV3_17820 (pnp)
Messenger RNA biogenesis [BR:
ner03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NeNHUV3_17820 (pnp)
Transfer RNA biogenesis [BR:
ner03016
]
Prokaryotic type
tRNA degradation factors
NeNHUV3_17820 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
XHY14502
LinkDB
All DBs
Position
complement(1790951..1793101)
Genome browser
AA seq
716 aa
AA seq
DB search
MFNVTKKSIQWGEETLTLETGKVARQADGSVIATYGETSVMANVTFAKAQKPGQDFFPLT
VHYNEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSH
DGVNDPDMVAMIAASAALTISGAPFMGPIAACRVGYEDGDYILNPEIDDMHDLKNNPDQR
LDLVVAGTKDAVMMVESEAYELTEAEMLGAVKFAHEQIQPAIDLIIALAEDCAKEPFDFQ
APDYSDLFAAVKAAGEEKMRAAYAIGDKQERTTAVAAVKEEIKASLSEEQLADENLGTAL
KKLESGVLRGDVVKNGKRIDGRRTDEVRDIVCETGFLPRTHGSALFTRGETQGLVVTTLG
TGDDEQMIDSLQGMYKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPA
ATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLVLEDDGSYA
ILTDILGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMEKALDQAKDGRMHILGE
MNKALSGASEFSAHAPRIETMQVPTDKIREVIGSGGKVIREIVETSGAKVDINDDGIIKI
ASANAEAIQKAYDMIYSIVAEPEVNAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQATGEEIKEEPKKKKGDEEE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgtcacgaaaaaatctatccaatggggtgaagaaaccctcacgcttgagaca
ggcaaagttgctcgccaagctgatggttctgttatcgctacttacggtgagacatccgta
atggcgaacgtcaccttcgcaaaagcacaaaagccgggccaagacttcttcccgctgaca
gtgcactacaacgagaaatactacgctgctggtaaagtccccggtggctttttcaaacgc
gaagcccgcccaacagaaaaagaaacactgacatcgcgcctgatcgaccgtccgatccgt
ccgttgtttgttcctggcttcaaaaacgaagttctggtgatctgtactgttctgtcgcac
gacggcgtaaacgaccctgacatggttgcaatgatcgcggcatctgctgcgctgaccatt
tctggtgctccattcatgggcccaatcgctgcgtgccgcgtcggttatgaagatggcgat
tacatcttgaacccagagatcgacgatatgcacgatctaaagaacaaccctgatcaacgc
cttgatctggttgttgccggcacaaaagacgctgtgatgatggttgaatcagaagcttac
gagcttactgaagccgagatgcttggcgctgtgaaatttgctcacgagcaaatccaacca
gcgatcgatctgatcattgctttggctgaagattgcgccaaagagccgtttgacttccag
gcacctgactacagcgatttgttcgcagcagttaaagccgctggcgaagagaaaatgcgc
gcggcatatgcaatcggtgacaagcaagagcgcacaaccgctgttgccgccgtcaaagaa
gaaatcaaagcaagcctgtcagaagagcagctcgcagacgagaaccttggcacagcgctc
aagaaactcgaaagcggcgttctgcgcggtgatgttgtgaaaaacggcaagcgcattgac
ggtcgtcgtacggatgaagtccgcgacatcgtttgtgaaactggcttcttgccacgtaca
cacggctcagccctgttcacacgcggcgagacacaaggcttggttgtgaccactttgggc
acgggcgatgacgagcagatgattgacagccttcagggcatgtataagtcgaacttcttg
ctgcactataacttccctccctattccgttggtgaagttggccgctttggccctcccggt
cgccgcgaaatcggtcacggtaaactcgcatggcgggctcttcaggctgttctgccagct
gcaacagacttcccgtacactgtgcgcgttgtttctgagatcactgaatcaaacggttcg
tcttcaatggcgtcagtttgtggtggctctttgtccatgatggacgctggtgtgccgctt
aaatcagctgttgctggtgtggctatgggcctcgttcttgaagatgacggatcatacgcg
atcctgaccgatatccttggcgacgaagatcaccttggcgatatggacttcaaagtggcg
ggtaccgaaaaaggtatcacatcacttcaaatggacatcaaagtcgcaggcatcacacct
gagatcatggaaaaagcactcgaccaagcaaaagacggtcgtatgcatatccttggcgag
atgaacaaagcgctgtctggcgcgagtgaattctctgctcacgcgccgcgcattgaaaca
atgcaggttccaacggataaaatccgtgaggtcatcggttctggtggtaaagtgatccgt
gaaatcgttgaaacatccggcgctaaagtcgacatcaacgatgacggcatcatcaagatc
gcctctgcaaacgcagaagccatccaaaaagcctacgacatgatctattccatcgtggca
gagccagaagtgaacgcggtctacaccggtacagtcgtcaaaatcgtcgacttcggtgca
ttcgtgaacttctttggtaagcgcgatggcttggtacacgtcagccaaatcgaaaaccgc
cgtttgaaccacccatccgacgtcctcaaagagggccaggaagtgaaagtcaaactgctg
ggctttgatgaccgcggcaaggttcgcctttctatgaaagtagtggatcaagcaactggc
gaagagatcaaagaagagccgaaaaagaaaaaaggcgacgaagaagaataa
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