Nitrosomonas eutropha: Neut_0129
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Entry
Neut_0129 CDS
T00393
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
net
Nitrosomonas eutropha
Pathway
net03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
net00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Neut_0129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
net03400
]
Neut_0129
Enzymes [BR:
net01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Neut_0129
DNA repair and recombination proteins [BR:
net03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Neut_0129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
DUF3638
ERCC3_RAD25_C
AAA_30
AAA_22
CTE_SPB4
Motif
Other DBs
NCBI-ProteinID:
ABI58417
UniProt:
Q0AJQ4
LinkDB
All DBs
Position
complement(124618..128082)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSKPIKIRPGHLQRYTGFVGSSDACALAQLANQQNQDNQLLAVITANAQDARRLLEEIP
FFAPDLRVSLLPDWETLPYDVFSPHHDLISERLATFHQIVNNACDVLIVPVTTALYRMPP
REFLAAYSFFIKQKSTLDLQSFRSQMSLAGYSHVSQVISPGEYSIRGGLIDLFPMGSPLP
YRIDLFDDEIESIRTFDADTQRSIYPVNEIRLLPAREFPLDDTGRSRFRTGFREKFEGDP
TRSWLYQEISKGNIPAGIEYYLPLFFEQTATLFDYLPQHSTLCLHGEIASTIENFWQDTR
SRFQLMRSDIDRPLLPPADLFLLEDQFYGYLKAYSRIEIQGGDQQTISEPFSLPLPSVRV
DRRAADPIEQLTTFISTFTQDGGRILLLAESLGRRELMAEYLREYGLQLKLCEDYAAFQS
DHTLCMLGVAALHNGFILAAEKLALITETELYATHVRGQRARDARKTTSADSILRDLSEI
KPGNPVVHEQHGIGRYLGLVSMDAGENNSDQSDEFLALEYQGGDKLYVPVTQLHLISRYS
GAAPEEAPLHKLGSGQWEKAKRKAMQQVRDTAAELLNLYAQRAARKGHTFRLNQHDYNVF
ADGFGFEETPDQAAAIHAVIQDMVSGKPMDRLICGDVGFGKTEVALRAAFIAIADGRQVA
ILVPTTLLAEQHYQSFSDRFGLIADQWPVKIAELSRFRSTKEQSEALQSLAQGTTDIIIG
THKLIQDKVKFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLEG
LRDFSVIATAPQRRLAIRTFVHPYTEGIIREACLRELKRGGQIYFLYNEVSTIQNMYTKL
IKLLPEAKINIAHGQMRESELEHVMRDFYQQRFNMLLCTTIIETGIDVPTANTIIIHRAD
KFGLAQLHQLRGRVGRSHHQAYAYLLTPEKAALTIQAIRRLEAIQAMEELGSGFYLAMHD
LEIRGAGAVLGDSQSGEMQEVGFSLYNSLLDAAIKSLKAGHEPDMQQPLGISTEVRLHVP
ALLPENYCNNIHERLVLYKRMAGCSDEAELDEIHQELIDRFGLLPDPARALLDSHRLRIE
AKKMGITRIDASQDSIQLQFVTDPPIEAIKIIQLIQSGKEYSMSGPDRLIIRAQIPDIGE
RIKKIRKLMTELKN
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaaaccaatcaaaattcgtccaggacatctacaacgttacactggttttgta
gggtccagtgatgcctgtgccctggcacaactggcaaaccagcagaatcaggacaaccag
ctgttggctgttatcaccgccaatgcacaggatgcacgaagattacttgaggaaatccct
ttttttgcacccgatttgcgtgtgagtttattgccggactgggaaactttaccttacgat
gttttttccccacaccatgatctgatttcagaacgcctggctacttttcaccagattgta
aacaatgcctgcgacgtattgatcgtaccggttacaactgcgttatacagaatgccgcca
cgagagtttctggcagcgtattcgttcttcatcaaacaaaaaagtacattggatttgcag
tcatttcgcagccagatgtcgttggctggctattcccatgtttcacaagtaatttcgccg
ggagaatacagtattcgcggagggttgatcgacctgtttcccatggggagcccgcttcct
tatcgtattgatctgttcgatgatgaaattgaatccatacgtacattcgatgcggatacc
cagcgcagtatttatccagtcaatgaaatccggctgttaccggcacgagaatttcccctc
gacgataccgggcgcagtcgtttccgtaccggcttccgggaaaaatttgagggagatcca
acacgcagctggctgtatcaggaaatcagcaagggaaatattcctgccggaattgaatat
tacctgccacttttttttgaacagactgctacattatttgattatttaccacagcattcc
acgctatgcctgcacggtgaaattgcatccaccattgaaaatttctggcaggatacccga
tcacgctttcagctgatgcgcagtgatattgatcgccccttacttccccccgctgatctg
tttttgctggaagatcagttttacggctacctcaaagcatatagtcggatagaaatacag
ggcggtgatcagcaaacaattagtgagccgttttctcttcctcttccatctgtgcgggta
gatcgtcgtgctgccgacccaatcgagcagttaaccacttttatcagcacatttacgcag
gacgggggccggattttactgctggcagaaagcctggggcggcgcgagctgatggccgaa
tacttgcgtgaatatggcctgcaattaaaactctgcgaagactatgctgcttttcaatcg
gatcacacgctctgcatgctcggtgtggcggccttgcacaatggttttattctggctgca
gaaaaactggcactgatcactgaaaccgagctgtatgctacccatgtacgcggacagcgc
gcgcgcgatgcacgcaaaaccacttctgctgattccattttgcgtgatctgtctgaaatc
aaacccggcaatccagtggtgcacgaacaacatggtatcggccgttatctcggcttggta
agtatggatgctggcgagaataattcagaccaatctgacgaattcctcgcgctggaatat
cagggaggagacaagctgtatgtaccggtcacacagcttcatcttatcagccgctacagc
ggtgctgcgccggaggaggctcctttgcacaagctgggaagtggccaatgggaaaaagcc
aagcgcaaggcgatgcaacaggtacgcgataccgctgctgagctgctgaatctgtatgca
cagcgtgccgcccgcaaaggccatacatttcgccttaatcaacatgattacaatgtcttc
gcagacggctttggttttgaggaaacaccagatcaggctgccgccattcatgcggtcatt
caggatatggtttccggaaagccaatggatcgactgatttgtggagatgttggcttcggc
aagactgaagtcgccttgcgcgctgctttcattgcgatcgcggatggcaggcaggttgcg
attttggtgccaaccacgctgctggcagagcagcattatcagagtttctctgatcgcttc
gggctgattgccgaccaatggccggtaaaaattgctgagctttcacgtttccgttcgacc
aaagaacaatccgaagcgctgcaaagcttggcgcaaggaacaaccgatattattatcgga
acacataagctgattcaggacaaggtcaaattcaaaaacctggggctggttatcatcgat
gaagaacatcgtttcggtgtgcgccagaaggaacaactcaagaaattacgtgctgaagta
gatgtactaacactgactgcaacgccaattccacgcacactggcaatgtcgcttgaaggt
ctcagggatttttcagttatcgctactgctccccagagaagattggcaatccggacattc
gtacacccttacacagagggaatcattcgcgaagcctgcctgcgcgaactgaaacgtggt
ggacaaatctattttctctacaatgaggtcagcaccattcagaacatgtataccaagctg
atcaaactgctgccagaagcaaaaataaacattgcacatgggcaaatgcgggaaagcgag
ttggaacatgttatgcgtgatttttatcagcagcgtttcaatatgctgctgtgtacgacc
atcattgaaacaggaattgatgttcccaccgccaatacgattattatccatcgcgctgat
aagttcggcctggcacagttacatcagttgcgcggcagggtgggccgttcgcaccatcaa
gcgtatgcctatttgctgacaccggaaaaagcagcactgacaatacaggcaatcagacga
ctggaagccattcaggcaatggaagagcttggatccggtttttatctggccatgcatgac
ctggagattcgtggtgcaggtgcagtgttgggggattcacaaagtggcgagatgcaagag
gtcggatttagcctttacaattcgttactggatgcggcgattaaatcattgaaagcaggt
catgagccggatatgcagcaacctctcggtatttcaacggaggttaggctgcatgttcct
gcactactgccagaaaattactgtaacaatattcatgaacggctcgttctgtacaagcgc
atggcgggttgcagcgatgaggcggagctggatgagattcaccaggagttgattgatcgc
tttggcctgttacctgatccagcccgtgcattactggacagtcaccgactacgcattgaa
gccaaaaaaatgggtattacgcgtattgacgcaagccaagatagtattcagttacagttt
gtaactgatccaccgatcgaagctataaaaatcattcagcttatccaaagtggtaaggaa
tacagtatgtccgggcctgatcgcttgatcatccgggcgcaaatcccggatatcggagag
cggataaagaaaatcaggaaattgatgacggaattgaaaaactga
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integrated database retrieval system
