Nitrosomonas eutropha: Neut_0880
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Entry
Neut_0880 CDS
T00393
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
net
Nitrosomonas eutropha
Brite
KEGG Orthology (KO) [BR:
net00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
net03016
]
Neut_0880
Enzymes [BR:
net01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Neut_0880
Transfer RNA biogenesis [BR:
net03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Neut_0880
Prokaryotic type
tRNA splicing ligases
Neut_0880
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
UPF0508_C
Motif
Other DBs
NCBI-ProteinID:
ABI59141
UniProt:
Q0AHP1
LinkDB
All DBs
Position
complement(900338..901510)
Genome browser
AA seq
390 aa
AA seq
DB search
MHTNGKAIITTEKLPIKLWLEADQMEEGALEQARNLANLPFAFKHIAIMPDTHEGYGMPI
GAILATKGVIVPNAVGVDIGCGMCSLRTNLTDISTEDLKTIMSIIRNTIPVGFNHHKTQQ
DEAWMPERKGDLPIVNQEYESALYQIGTLGGGNHFIEIQKGSDGYIWIMIHSGSRNIGFT
VANHYNDVAKALNKAAGEDISNDLAYLPESSEYFELYKNEMDYCLEFALANRKLMMERVK
TAFREIRPEVGFSEFINKPHNFAAEEEHFGETVLVHRKGATRARKGEWGMIPGSQGTGSF
LVKGKGEAQSFESCAHGAGRIMSRTQARKKLDLEEEIQALDDLGVLHAIRGRKDLDEAPG
SYKDIDEVMNHQKDLVEVQIELQPLAVIKG
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgcacactaatggaaaagcaattattacaacggaaaaactgccaataaagctgtggttg
gaagccgatcaaatggaggagggagcgttggagcaggcgcgcaatcttgccaatttgcca
tttgcctttaagcatatcgccattatgcccgacactcacgaaggttacggcatgcccatc
ggggctatcctagccactaagggggtcatcgtacccaacgccgtcggtgtggatatcggc
tgcggtatgtgttccctacggaccaatctgacagatatctcaacagaggatctgaaaacc
atcatgagtatcatccgcaacaccattccggtgggtttcaaccaccacaaaacgcagcaa
gatgaagcttggatgcccgaaaggaaaggcgatctgcctatcgtcaatcaagagtacgaa
agcgccctatatcagattggcacattaggtggcggcaatcactttatcgaaatccaaaaa
ggctcagatggttatatttggattatgatccactctggctctcgcaatatcggctttaca
gtcgccaaccattacaatgatgtagcaaaagcattaaataaggcagccggcgaagatatc
tcgaatgacttagcctaccttccagagtcatctgagtatttcgaactgtacaaaaatgaa
atggactactgccttgagtttgccctagccaatcgaaaattaatgatggagcgggtaaaa
acggcatttagagagattcggcctgaggttggattcagcgaatttattaataaaccacat
aactttgccgccgaagaagaacattttggcgaaaccgttcttgttcatcgcaaaggtgca
acacgagcgcgaaaaggtgaatggggcatgattcctggctcgcaaggtaccggttccttt
ctggtaaaaggtaaaggtgaagcacaatctttcgagtcttgcgcacatggtgctggacgc
attatgagtcgtacccaagcccgcaaaaaactagacctagaggaagaaatccaagccctt
gatgatctcggtgttttacacgccatccgcggccgtaaagatctggatgaagcgccaggc
tcttataaagatatcgatgaagtgatgaaccaccaaaaagacttggtcgaggtacaaatt
gaattgcaaccactggctgttatcaaggggtaa
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