Nitrosomonas europaea: NE0008
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Entry
NE0008 CDS
T00130
Symbol
mfd
Name
(GenBank) mfd: transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
neu
Nitrosomonas europaea
Pathway
neu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
neu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NE0008 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
neu03400
]
NE0008 (mfd)
Enzymes [BR:
neu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NE0008 (mfd)
DNA repair and recombination proteins [BR:
neu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NE0008 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
CTE_SPB4
SWI2_SNF2
DUF3638
ERCC3_RAD25_C
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAD83919
UniProt:
Q82Y77
LinkDB
All DBs
Position
complement(8100..11564)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSKLNPLSSESLPRYTGLEGSSDACALARLANRNPAGQLLAVITASALDAQRLLEEIPF
FAPDLRVSLLPDWETLPYDIFSPHQDLISERLATFYQIAHNACDVLIIPVTTALYRMPPR
EFLAAHSFFVNQGSTLDLQSFRSQMSLAGYSHVSQVLSPGEYSIRGGLIDLFPMGSPLPY
RIDLFDDEIESIRTFDVDTQRSIYPVKEIRLLPAREFPLDDNGRSRFRTGFREKFEGDPT
RCRLYQEISKGNIPAGIEYYLPLFFEQTATLFDYLAQHSTVCLHGEITPAIENFWQDTRS
RYQLMRNDPDRPLLPPMDLFLPEDQFYGYLKSYKRIEMHTGQQVKTDKPFARSLPPVRVD
RRASNPIEQLTAFVHTFTQKGGRVLLLAESMGRRELMAEYLREYGLKLKLCEDFAAFQSD
TASCMLSVASLHSGFILAAENLALVTENELYATHVRGQRTRDARKTVSADSILRDLSEIK
PGSPVVHEQHGIGRYLGLVNMNMGEDDSGQSSEFLALEYQGGDKLYVPVTQLHLISRYSG
AAPEAAPLHKLGSGQWEKAKRKAMQQVRDTAAELLNLYAQRAARKGHIFRFNQHDYNAFA
DGFGFEETPDQATAINAVIQDMVSGKSMDRLICGDVGFGKTEVALRAAFVAVTDGKQVAV
LVPTTLLAEQHYQNFSDRFGLIADQWPVKIAELSRFRSAREQAEALQSLAQGTTDIIIGT
HKLIQDKVKFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLEGL
RDFSVIATAPQRRLAIRTFVHPYSEGIIREACLRELKRGGQIYFLYNEVSTIQNMYTRLT
TLLPEARINIAHGQMRESELEHVMRDFYQQRFNLLLCTTIIETGIDIPTANTIIIHRADK
FGLAQLHQLRGRVGRSHHQAYAYLLTPPEKAALTTQATRRLEAIQAMEELGSGFYLAMHD
LEIRGAGAVLGDSQSGEMQEVGFSLYSSLLDAAIKSLKAGHEPDMQQPLGVSTEIRLHVP
ALLPESYCGDIHERLILYKRMAGCSDETELDEIHQELIDRFGLLPDPARALLDSHRLRIE
ARQLGITRIDAGPDNIQLQFVPEPPIEAIKIIQLIQSSKEYSLSGPDRLSVRLQIPDVGE
RVKKIKKLMTLLKN
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaaactcaatccactttcttcggaatcgctgccacgttacaccggtctggaa
ggttccagtgatgcctgtgccctggcgcggctggcaaaccggaatccggctgggcagtta
ctggcggtcatcacagccagtgcactggatgcacaaagattgctcgaggaaattcccttt
ttcgcgcccgatttgcgcgtgagcctgttgccggactgggaaacgctgccttacgatatt
ttttcacctcaccaggatttgatttcggaacgtctggctactttttaccagattgcacac
aacgcctgcgatgtcctgatcattccggttacgaccgcgttgtaccggatgccgccgcga
gaatttctggcggcacattcattcttcgtcaaccagggcagcacgctggatctgcagtca
tttcgcagtcagatgtcactggcgggctattctcatgtatcgcaggtgctttcaccggga
gaatacagtatccgcgggggactgatcgacctgttcccgatgggcagcccgctgccttat
cgtatcgatctgttcgacgatgaaatcgaatcgatacgcacttttgatgtcgatacgcag
cgcagtatctatccggtcaaggagatccggctgctgccggcgcgggaatttccactcgac
gataacgggcgcagccgattccgcaccggattccgggaaaaattcgagggcgatcccaca
cgctgcaggctttaccaggaaatcagcaagggcaatattcccgccggaatcgaatattat
ctgccgctttttttcgaacagacggccacgctgttcgattacctggcgcagcattccaca
gtgtgtctgcacggggagatcacaccagccatcgaaaatttctggcaggatacccgttca
cgctatcagttgatgcgcaatgatccggatcggcctttgcttcctccgatggatctgttt
ctgccggaagatcagttttacggctacctcaaatcatacaaacgaatagaaatgcatacc
gggcaacaggtaaagaccgataagccttttgcccgttcccttccacctgtacgcgtggat
cgtcgcgcttccaacccgatcgagcagctgaccgcttttgtccatacatttacgcaaaag
ggcggacgggttttactactggcagaaagtatggggcgacgcgagctgatggcggaatac
ctgcgcgaatatggcctgaaactgaaactctgcgaggattttgctgcatttcagtcagac
actgcctcttgcatgctcagtgtggcttccctgcacagcggttttatccttgctgctgaa
aacctggcgctggttaccgaaaacgagctgtatgccacgcatgtacgcggacagcgtaca
cgtgatgcacgcaagactgtttcggccgattccattttgcgtgatctgtccgaaatcaag
cccggcagtccggtggtacatgaacagcacggtatcgggcgttatctcgggctggtcaac
atgaatatgggtgaggatgattcaggccagtccagtgaatttctcgctctggaataccag
gggggagataagctgtatgtgccggtcacacagcttcatctcatcagccgttacagtggt
gccgcaccggaagcagccccgctgcacaaactgggaagtggccaatgggaaaaggccaag
cgcaaagcgatgcagcaggtacgcgatactgccgctgaactgttgaacctgtatgcgcaa
cgcgctgcccgcaaaggccatatattccggttcaaccagcatgattacaatgcttttgcc
gatggtttcggtttcgaggaaacaccagaccaagccactgccatcaatgcagtcattcag
gatatggtgtccggcaaatcgatggatcggctgatttgtggtgatgtcggcttcggcaaa
acagaagttgccctgcgggcagcttttgttgcagtcaccgatggcaagcaggtagccgta
ctggttcccaccacactgctggcagaacagcattatcagaatttctctgatcgtttcggg
ctgattgctgatcaatggccggtaaaaattgccgagctttcacgtttccgttcagctcgg
gaacaggccgaagcgctgcaaagcctggcgcaggggacaactgacatcatcatcggtaca
cacaaactgattcaggataaggtcaaattcaaaaacctgggactggtcatcatcgatgaa
gaacatcgtttcggagtgcgtcagaaagaacagctcaaaaaactgcgtgccgaagtggat
gtactgacgctgaccgcaacacccatcccgcgcacgctggcgatgtcactcgaaggcctc
agagatttttcggtgattgccactgcaccccagcgacgcctggcgatccggacattcgta
cacccttactcggaaggaatcatccgcgaagcctgtctgcgtgaactgaaacgcggcggg
cagatctattttctttacaatgaagtcagcaccattcagaacatgtataccagattgacc
acgctgctgccggaagcaagaataaacattgcgcacgggcaaatgcgggaaagtgaactg
gaacatgtcatgcgtgatttctaccagcagcgtttcaatctgctgctgtgtacgaccatc
attgaaacagggatagacattcccaccgccaacactatcatcatccatcgtgccgataag
ttcgggctggcacagttgcaccagttacgcggcagagtcggccgttcgcaccaccaggcg
tatgcctatctgctgacaccaccggaaaaagcagcactgaccacgcaggcaaccaggcgt
ctggaagctattcaggcgatggaagagctcggctccgggttttatctggccatgcacgat
ctggaaattcgcggtgcgggcgcggtattaggtgactcacaaagtggcgaaatgcaggaa
gtagggttcagcctttacagttcactgctggacgcagcaatcaaatcactgaaagccggt
catgaaccggatatgcagcaacccctgggagtttccacagaaatcagattgcatgtaccg
gcgctattgccagaaagttactgtggcgatatccatgagcgattgattctgtacaaacgc
atggcgggttgcagtgatgaaacagaactggacgagattcaccaggagctgatcgaccgc
tttggtctgttacctgatcctgcccgcgcgttactggacagtcatcggctgcgcatcgaa
gccaggcagctgggcattacccgtatcgatgccggaccagacaacattcagttgcaattt
gtaccagaacccccgatcgaagccataaaaatcattcagctcattcagagcagcaaggaa
tacagcctgtcagggcctgaccgcctgagcgtccggctgcaaataccggatgttggcgaa
cgcgtcaaaaaaatcaaaaaactgatgacgttactgaaaaactga
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