Nitrosomonas europaea: NE0093
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Entry
NE0093 CDS
T00130
Name
(GenBank) recQ; ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
neu
Nitrosomonas europaea
Pathway
neu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
neu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NE0093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
neu03019
]
NE0093
03400 DNA repair and recombination proteins [BR:
neu03400
]
NE0093
Enzymes [BR:
neu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NE0093
Messenger RNA biogenesis [BR:
neu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NE0093
DNA repair and recombination proteins [BR:
neu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NE0093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
wHTH-PRTase_assc
Phage_rep_O
DUF2250
Ribosomal_L18
DUF4423
HTH_27
Motif
Other DBs
NCBI-ProteinID:
CAD84004
UniProt:
Q82XZ7
LinkDB
All DBs
Position
complement(115940..120313)
Genome browser
AA seq
1457 aa
AA seq
DB search
MRHQFPEVGRLISELRDAPCEREDCQYCQTTHDPRHELKRYFGFPDFRYEQPGESLQHDI
VLAGMRGQHVLAILATGGGKSLCYQLPALNRFHRNGSLTVIVSPLQSLMKDQVDGLLERN
VQCAAALNGLLTMPERAEVLEKIQMGDVGILLVSPEQFRNKAFRRAIRQRQVGAWIFDEA
HCLSKWGSDFRPDYLYVSRFIREYTGDQPLAQIGCFTATAKPDVLADIQSHFRESLGIEF
KVFPGGHERTNLHFDVLPCTKAEKWSRTDRLLHEHLDSQEGGAVVFVSSRKSAEELSDFL
IGQGWPCKHFHAGLEPNTKTDIQDDFKAGQLRIIVATNAFGMGVDKADIRLVIHADIPGS
LENYLQEAGRAGRDQGDARCVLLYDPQDIETQFGISERSKLSIRDIQQILRKLRNESNRR
KGGKLVITAGEILLDDDVDTSFSADERDAETKVVTAVAWLERGDYLKREENHTQIFPARL
DMSEKEAEKRLLKAKLPQRRLEEFRAILRFLYGADADERVNTDQLMQLTSLESEEVASAL
KQLEEMGLLVNDSQITLYVRHGVTGASSQRLQSSLELERALLQRLPELASDAGQGEWQDL
NLPALAAELKADTRQGDLLPLQVLRLLRSLADDHDANSQQRSSFELRQLNRDYLKLRIKG
GHSWRQIERFGEKRRALAGVLMEFLIGKLPPGSRNKDLLVETSFGELVKALESDLELPHL
IAPDQRRKAVEHVLLYLHRQDILTLNHGMTVMRRAMTIEVKKEDKRKTFLKEDYLRLDEH
YREKRIQVHVIHEYAEVALKEMAEALRLVLDYFTDSKQAFIKRHFAGREDVLKLATSEAS
WKSIIESLSTTQKLIVADDDDINRLVLAGPGSGKTRVIVHRIAYLLRVRRVPATSIVALT
FNRHAANEIRKRLLALVGADAYGVSVLTYHSMAMRLTGTRFERGDTVDERALKRVLSDAV
ELLEGKRNVEGEDNLREQLLRGYRYILVDEYQDIDDLQYRLVSALAGRHAEEDGRLCIMA
VGDDDQNIYAWRDTNNRYIERFREDYEASISFLVDNYRSSLRIIEAANQLIGQNSARLKE
ANPIRIDRARQELPAGGLWEEQDKQRKGRVLRLLIDPSDRERGNLQAQAAMLELERLLVL
EQGSWNGCAVLARTHRYLWPIQAWCEQHDIPYFLAADKETALPITRQRSFVAAIDSLREI
ESALCAADAWLRLSGSNQLVEAEWKSFFQTAFEQMRGELGDCQLGSGALIDWLYDYAREL
RQQPKEGLYLGTVHSAKGLEFRHVVLLDGGWSTQVDTLADERRLYYVGMTRAEQTLALCE
FADGNPFSRSLMKGVQQHAFQGQPLPELELRFQQLTLKEIDISFAGRQLPHARIHKAIEA
LREGDPLTLKEEAGRYQLLDRQGNVVGRTAKSFQPQIGFAHCEVAVVIVRFAEDSEEQYR
DLNKCERWEVVVPRGRG
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
gtgcggcatcagtttccggaggttggccgactaatttccgaactgcgtgatgcaccgtgt
gagcgagaggattgccagtattgtcagacgacgcatgacccacgccacgagctaaagcgt
tacttcggcttccctgattttcgctacgagcagccaggggaaagtcttcagcacgatatc
gtgctggccggcatgcgtggccagcatgtactggccatcctggcgaccggcgggggcaag
tcgctatgttatcaattgccggcgttgaaccggttccatcgtaacggcagtcttaccgtc
atcgtttcgccgttgcagtcactgatgaaggatcaggtcgacggactgctggagcgcaac
gtccagtgcgccgcagcgctgaatggcctgcttaccatgccggagcgcgccgaggtactg
gagaagatccagatgggcgatgtcggcattttgcttgtgtcgcccgagcagttccgcaac
aaggctttccggcgagcgatccgtcagcgtcaggttggtgcctggattttcgatgaggcg
cactgcctgtcgaaatggggcagcgactttcggccagactacctttatgtgtcccgcttc
atccgggagtacaccggtgaccaaccgctggcgcagatcggctgttttaccgcgacggcc
aagcccgatgtgctcgcggatattcagagccacttcagggaaagcctgggcattgaattc
aaggtgttccccggagggcacgagcgaaccaatctgcattttgacgtgctgccctgcacc
aaggcagagaagtggtcgcgtaccgatcgcttgctgcacgagcatcttgacagccaggag
ggcggtgcagtcgtcttcgtttccagccgtaagagtgctgaggagctgtcagacttcctg
ataggtcaaggctggccttgcaagcacttccatgccggtctggagcccaacaccaaaacg
gatatccaggacgacttcaaagcaggacaactgagaatcatcgttgccaccaacgccttc
ggaatgggcgtggacaaggctgatatccgtctcgtcatacatgccgacataccgggatcg
ctggagaattacctgcaggaggcgggcagagctggacgtgatcagggcgatgcgcgctgc
gtgctgttgtacgacccgcaggacatcgaaacccagttcggcataagcgagcgctcgaag
ctcagtattcgcgacattcagcagatcttgcgcaagttgcgtaacgagagcaatcggcga
aaggggggcaagttggtcatcacagcgggtgaaatcctgttggatgatgatgtcgatacc
agtttttccgcggacgagcgcgatgcagaaaccaaggtcgttacggcggttgcctggctg
gagcgtggcgattacctcaaacgtgaggaaaaccatacacagattttcccagcacgactg
gatatgagtgagaaagaggccgagaagcgcttgctgaaagccaagctgccgcagcgtcga
ttggaggagttcagggctattttgcgctttctctacggcgccgatgctgatgagcgggtg
aacaccgaccagttgatgcagttgaccagtctggagtcggaggaggttgccagcgcactc
aaacaattggaggaaatggggctgctggtcaacgactcgcagatcacgctgtatgtgcgc
cacggtgtgaccggggcttccagtcaacgcctgcaaagctccctggagttggaaagggct
ttgctgcagcgcttgccagagctggcgtctgacgccgggcagggggagtggcaagatctg
aatctgccggcactggccgctgagctcaaggcggacaccaggcagggagatctcctgccg
ctccaggtgctgcgcttgttgcgcagcctggccgacgatcatgatgccaatagccagcag
cgcagcagcttcgagttacggcagctcaaccgtgattacctcaagttgcgtatcaaaggc
ggacattcctggcggcagatcgaacgtttcggtgaaaagcgccgcgctctggctggcgta
ttgatggagttcctgatcggtaagctgccccccggctcgcgcaacaaggatctgctggtt
gagacgagttttggcgagttggtcaaggcattggagtctgatcttgagctgccccatctc
atcgctccggatcagcgccgcaaagcagttgagcatgtgctgctctatctgcatcggcag
gacattttgaccctcaaccacggcatgacggtcatgcgtcgagccatgaccatcgaggtc
aaaaaggaagacaagcgcaagaccttcctcaaggaggattacctgcgactcgacgagcac
taccgtgagaagcgtatccaggttcatgtgatacatgagtatgccgaagtggcgctgaag
gagatggccgaagcgttgcgcttggtactggattacttcactgactccaagcaggcattc
atcaagcgccattttgccgggagggaagatgtgctcaagctggcgaccagcgaggcgtca
tggaagtcgatcatcgagtcgctgagcactactcagaaactgatcgtcgccgacgatgat
gacatcaaccggctggtgctggccgggccgggctccggcaagacacgtgtgatcgtgcac
cgcattgcttacctgctgcgggtgcggcgagtgccggcgactagcatcgtggcgctgacc
ttcaaccgccatgcagcgaacgagatccgtaaacggctgttggccctggtcggggccgat
gcttacggtgtcagcgttctgacctatcacagcatggccatgcgtttgaccggcacccgc
tttgagcgaggtgatacggttgacgaacgagccctcaagcgggtactgagcgatgctgtc
gagttgctggaaggcaagcgcaatgttgagggcgaggacaacctacgcgagcagttactg
cgcggataccgttacatcctggttgacgaataccaggacatcgacgatctgcaataccgc
ctggtcagtgctctggccggacggcacgcggaagaggatggccggttgtgcatcatggca
gtaggtgacgatgaccagaacatctatgcctggcgcgataccaacaaccgttatattgag
cgtttccgcgaggactatgaggcgtcgatcagcttcctggtcgataactaccgttcttcc
ctgcgtatcattgaagcggccaaccaactcattggccagaattcggctcgtctgaaagag
gccaatcccatccggatcgacagagcacggcaagagctgcctgccggtgggctatgggaa
gagcaggataaacagcggaaaggccgggtactgagattgctgatcgacccgagcgaccgt
gagcgcggcaatctgcaggctcaggcggccatgctggagttggagcggttgctggtgctc
gagcaagggagttggaacggctgtgcggttctggctcggacgcaccgctatctgtggcca
atccaggcctggtgtgagcagcacgatattccttatttcctggcagcagacaaggaaacg
gcgttacccattactcggcagcgcagttttgtggctgcaatcgactctctgcgagaaatc
gaaagcgctttgtgcgcggctgacgcatggctgcgtttgtcgggtagcaatcaactggtg
gaagccgagtggaagagttttttccagacggcctttgagcaaatgcgaggagagttgggc
gactgccaacttggcagtggtgccttgatcgactggctgtacgactacgcccgtgaattg
cgccaacagccgaaggaaggtctctatcttggcaccgtgcattcggccaaagggctggag
ttccgccatgtcgttctgctggatggtggctggagcacgcaggtcgataccctggccgat
gagcgacgtttgtactacgtaggtatgacacgagccgaacagactctggcgttgtgcgag
tttgctgacggcaacccatttagccgcagcctgatgaagggggttcagcaacacgcgttc
cagggacaacctcttcctgagctggagctgcgttttcagcagcttacgctgaaggagatc
gacattagttttgccggtcgtcaattaccgcatgcccggatacacaaggcgattgaggcg
cttcgcgagggagatccgctgacgttgaaggaagaggctggccgctatcaactgctcgac
aggcaaggcaacgtagtagggcgaaccgccaagtcgttccagccacagattggcttcgct
cactgtgaagttgcggtagtcatagtgcgttttgccgaggatagtgaggagcaatatagg
gatttgaataagtgtgagcgctgggaggtggttgtgccgcgagggagagggtag
DBGET
integrated database retrieval system
