Nitrosomonas europaea: NE0350
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Entry
NE0350 CDS
T00130
Symbol
rnr
Name
(GenBank) rnr; exoribonuclease RNAse R (vacB protein)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
neu
Nitrosomonas europaea
Pathway
neu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
neu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NE0350 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
neu03019
]
NE0350 (rnr)
03016 Transfer RNA biogenesis [BR:
neu03016
]
NE0350 (rnr)
Enzymes [BR:
neu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NE0350 (rnr)
Messenger RNA biogenesis [BR:
neu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NE0350 (rnr)
Transfer RNA biogenesis [BR:
neu03016
]
Prokaryotic type
tRNA degradation factors
NE0350 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_RNR_1st
OB_Dis3
CSD
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
CAD84261
UniProt:
Q820R5
LinkDB
All DBs
Position
392344..394545
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AA seq
733 aa
AA seq
DB search
MSIKRKRNKKNQLRELDPFLKREQTRYGQALPSREFILEVLDKQGVPISESKLLKLLDIT
SEESEFFRRRLAAMIREGQIICNRKGDICVTEKLELVKGVVQGHSDGFGFLIPDDGSTDL
FLTPKEMHKVLHGDRVIARVTNIVDRRGRRECRIIRVLESVNTQLVGRLFEEHGIFFVVA
EDKRINQDILIPKENIMDAHAGQIVVARIIQQPREHAQPIGHIIEILGDYAAPGMEIEIA
LRKFDLPHEFPPEVISVKFPQKVLKKDLTKREDIRHLPLVTIDSETARDFDDAVHCCQEG
KDYRLFVAIADVSHYVRDQDALDKEAFNRGNSVYFPRRVIPMLPEVLSNGLCSLNPQVDR
LCMVCEMLWTARGELVEYRFYPAVMLSHARLTYNIVAELLDQPKGAVAKEHRQLLPHIQL
LYRLFKVLHKSRVKRGAIDFETIETEMVFNDQGKIEQIYPVKRNDAHRLIEECMLAANVC
AADFLQKHEQPVLYRIHEGPTDEKLVALRDFLKEFGLQLRGGEKPQARDYARILDRIKER
ADAQLLQTVMLRSLSQAMYNPDNIGHFGLAYEMYTHFTSPIRRYPDLLVHRAIKAVLADK
QYEPGDWHEIGKHCSQTERRADEATREVQSWLKCFYMQDKIGDCFGGVVTGVTAFGLFVT
LDEIYVEGLVYISELPSDYFHYDAVKHVLRGERSGISFRLGDRLQVKLVRVDLATRKIDF
ILADNSVRKKSSR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaatcaagagaaaaagaaacaagaaaaatcagcttcgtgaactcgatccctttctt
aaacgtgagcagacccgttacgggcaagcgctgcccagtcgtgaattcatcctggaagta
ctggataaacagggggtgccgatcagtgaatccaaactattgaaactgctggatattaca
tccgaagaatccgaattctttcgtcgccggctggctgcgatgattcgtgaagggcagatc
atctgtaatcgcaagggcgatatttgtgtaaccgaaaaactggaactcgtaaaaggggtt
gttcaaggccatagcgatggttttggttttctgattccggatgatggcagcactgatctg
ttcctgactcccaaagagatgcacaaagtgctgcatggtgatcgcgtcattgccagggtt
accaatatcgtggatcggcgggggcggcgggaatgcagaatcatcagagttctggagagc
gtcaatacgcagctggtcggaagattattcgaagaacacggtattttcttcgtcgtggct
gaagataagcggatcaaccaggatattctcatccccaaggaaaatatcatggatgcgcat
gccgggcagatcgttgtggcacgcatcattcagcagccaagggagcatgcccagccgatt
ggacatattatcgagatcctgggggattatgctgcgccaggcatggagatcgaaatcgcg
ttgcgcaagtttgatttaccccacgaatttccaccggaagttatctctgtcaaatttccc
cagaaagttctgaagaaagatctcactaaacgggaggatattcgtcatctgccgctggtg
acgatcgacagtgaaacagcgcgggattttgacgatgctgttcattgttgtcaggaagga
aaggattatcggctatttgttgccattgccgatgtcagccattatgtccgtgatcaggat
gctctggataaagaagcattcaatcggggtaattcagtttatttcccgcggcgggtcatt
ccgatgctgccggaagtgctttccaatggattgtgttcactcaatccgcaggtagatcgc
ctgtgtatggtatgtgaaatgctttggacggccagaggagaactggtcgaatatcgtttt
tatccggcagtgatgctttctcacgcgcgcctgacgtataacatcgttgccgaactgctg
gatcagccaaaaggggcggttgccaaagaacacagacaactgctgccacatattcaattg
ttgtaccgtttgttcaaggtgttgcacaaatcccgcgtaaagcggggcgcaattgatttc
gaaaccattgaaacagaaatggttttcaatgatcagggcaagatcgagcagatatacccg
gtaaagcgtaatgatgctcatcgtctgatcgaggaatgtatgctggcggccaatgtgtgc
gcggctgattttttgcagaagcacgagcaacccgttttataccggattcatgaagggccg
actgatgaaaagctggtagcactgcgggattttctgaaagagtttggcctgcagttacgt
ggcggtgaaaaaccccaggccagagactatgcccggatactcgatcgcatcaaggagcgg
gcagatgcgcaattgctgcaaacggtgatgttgagatcgctcagtcaggctatgtacaat
ccggataatatcgggcattttggtctggcctatgaaatgtatactcattttacttcaccc
atccggcgttatccggatctgctggtgcatcgtgccatcaaggcagtacttgcggataaa
cagtatgaaccgggtgattggcatgaaatcggcaaacattgttcgcaaacggagcggcgt
gccgatgaagctacgcgagaagttcaatcctggctcaagtgtttttacatgcaggataaa
attggcgattgctttgggggtgtggtcacaggagtaactgcctttggactgttcgtcact
ctggatgagatttatgtcgagggtctggtttatatttcagaactgcccagtgattatttt
cattatgatgcagtcaagcatgtactgcgcggcgagcggagtggaatcagtttccggttg
ggtgacaggctgcaggtaaaattggtccgggtcgatctggcgacgcgcaagatcgatttc
atccttgcagataacagcgtacgcaagaaatccagcaggtaa
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