Nitrosomonas europaea: NE0833
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Entry
NE0833 CDS
T00130
Symbol
hrpA
Name
(GenBank) HrpA-like helicases
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
neu
Nitrosomonas europaea
Brite
KEGG Orthology (KO) [BR:
neu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
neu03019
]
NE0833 (hrpA)
Enzymes [BR:
neu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NE0833 (hrpA)
Messenger RNA biogenesis [BR:
neu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NE0833 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
AAA_23
nSTAND3
T2SSE
ResIII
ABC_tran
FtsK_SpoIIIE
Cupin_3
Motif
Other DBs
NCBI-ProteinID:
CAD84744
UniProt:
Q82W62
LinkDB
All DBs
Position
905417..909172
Genome browser
AA seq
1251 aa
AA seq
DB search
MTYLPEQPACITYPEDLPVVARREEIAHAIQQHQAIIICGETGSGKTTQLPKICLELGQG
AGRQGTGHLIGHTQPRRIAARTVAARIAAELNSPLGKLVGYKVRFSDQTHPNTRIKLMTD
GILLAETQQDPLLRAYQTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKLIITSATIDAQ
RFASHFNDAPIIEVSGRLFPVEIHYRPNDPIDGEDRDLPRAILSTIDEAMRMGEGDTLVF
LPGEREIRETAETVRKYAFSGPGGKAGLEILPLFARLSHTEQARIFAPGQQRRIVLATNV
AETSLTVPGIRYVIDTGLARINRYSYRNKVEQLLVEKISQASANQRAGRCGRVMNGVCFR
LYSEEDFNARPEYTDPEILRSSLAAVILRMKSLKIGDVEQFPFIQPPAPRMIADGYQLLS
ELGALDERKGLTQIGHQLARFPTDPRIARMIMAAKQENCLSEVLIIAAALSLQDPRDRPF
EHQQAADQAHQPFRDDRSDFMGYLKLWDFYDELLKHKKSNKKLIEQCQKNFISHRRMREW
REIHGQLHILISEMGLRPNQVSAGYDEIHRALLSGLLGNIGFKSDEKGVYEGARAIKFSI
FPGSSLRKKQPKWVVAAELAETTKLYARCAAAIDPAWLERIAGKLCKRHYFDPHWEKQRA
QAMAFERITLYGLTIVPKRRIAYGPIDPAHAREIFIRQALVAGEYESTAPFLQHNQQLID
EIRELESKVRRQDILVDEQQIFEFYAARIPAGIYSGTAFEKWRKQAEQTEPELLYLTREV
LIRQAVDGTAAEQFPETLTAAGHVLPLSYRFDPGHPLDGVTVTVPLPLLNQIMPFHFDRL
VPGLIREKIGWYVKMLPKQVRRHAIPVPQFVTRFLEWLDSCPDQAMLLAESLTAFIRSET
GIKVPLDTWDSRLLPVHLQMNVKVIDDAGMTLGMGHDLIELKAQFGQTAQQLFARGAGAE
PDSIERDDITRWDFGELPVETRFSRAGKLLTGYPALVDQEQSVAVRIFDTQEGAQRSMRG
GVLRLLCLALKDRIKQLEKNLPVDRQAILLMSSLIEMDRLKEDIRSAIIDLALIGDDPLP
RNEDEFNSQTSRARTRLGSVSQEIAGLIHTIAQPCQELKKRLSVLDKSAVFLKKDMEEQL
HHLIYPGFLSTTRWQYLQHLPRYLKGMILRLDKYNKNPARDQEQTEIISTLWNQYIQRLN
KHRQAGVIDPNMEIFRWQIEELRISLFSQELKTPAPVSVKRLQKLWESVRE
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
ttgacgtatctccccgaacaacctgcctgtattacctatccggaagatctgccggttgtc
gcacggcgtgaagaaatcgcgcatgcgatccagcaacaccaagcgatcatcatctgtggt
gagaccggttccggaaaaacgacgcagttaccgaagatctgcctggagctggggcaaggt
gccgggagacagggtaccggacatctgatcggccatacccaaccccggcgtattgccgcc
agaaccgttgccgcacgtattgccgcggaactgaacagcccgcttggaaaactggttggg
tacaaagtacggttctctgatcagactcaccccaatacgcgcatcaagctgatgaccgat
ggcatcctgctggcggaaacgcagcaggatccattgttgcgcgcctatcagaccattatc
atcgacgaggcgcacgagcgcagtctgaatatcgatttcctgctcgggtatctcaagcag
ttgctgccgcgccgcccggatctgaagctgatcatcacctccgctaccatcgatgctcag
cggtttgcctctcatttcaatgatgctcccatcattgaggtatccggcaggctgtttccg
gtagagattcattaccggcccaatgatccaatcgatggagaggatcgcgatttgccccgg
gccattctcagcacgatcgatgaagccatgcgcatgggggagggcgacacactggtattt
ctgcctggagagcgggaaatacgcgaaactgccgagacagtgcgcaaatatgctttttcc
ggcccgggtggcaaggccggtttagagattctgccgctgtttgcccggttatctcataca
gaacaggcgcgtatttttgctcccggtcagcagcggcgaatcgtgctggcaaccaatgtt
gccgaaacctcacttacagtccccggtatccgttatgtgatcgatacagggctggcgcga
atcaaccgctacagctaccgcaacaaggtggagcagcttctggtcgagaagatttcccag
gcatcggccaaccagcgcgcagggcgttgcggacgggtaatgaacggcgtgtgtttcagg
ctgtattcagaagaagatttcaatgcccgcccggaatataccgatcccgagattctgcgt
tcctcgctggccgctgtcattctgcgtatgaaatcgctcaagattggggatgtcgagcaa
tttccattcattcagccgcctgcgccgcgcatgatcgcggatggttatcagcttttgtca
gagcttggcgcacttgacgagcgcaaggggctgacacaaatcggccatcaactggcaaga
ttcccaaccgatccgagaatcgcccgcatgatcatggcggccaaacaggaaaattgtttg
agcgaagtgctgatcatcgctgctgcactcagcctgcaggatccgcgtgatcggccgttc
gaacatcagcaggcggctgatcaggcgcaccagccgttccgtgatgatcgctctgacttc
atgggctatctcaaactatgggatttctatgatgagctgctcaaacacaaaaaatccaat
aaaaaactgatcgaacaatgccagaaaaatttcatttcccatcgcagaatgcgcgagtgg
cgcgagatccacggccagttgcatatactgatcagtgagatggggttgcgccccaatcag
gtttctgccggctatgatgaaatccatcgggcactgttatccggattgctaggcaatatc
ggtttcaaatcggatgagaaaggggtttatgagggggcacgtgccatcaaattctcgatt
tttcctggttcatccctgagaaaaaaacaaccgaaatgggtggtggcagctgaactggcg
gaaactaccaaactttatgctcgttgtgcggcagcaatcgacccggcctggctggaaaga
atcgctggtaaattgtgcaaaagacactattttgatccgcactgggaaaagcaacgtgcg
caggcgatggcgtttgagcggatcactttgtatggcctgaccatcgtccccaaacggcgc
attgcctatggcccgatcgacccggcacatgcacgcgaaattttcatacgtcaggcgctg
gtggcaggggagtatgaaagcactgcacctttcctgcagcacaaccagcaactgattgat
gaaatccgcgagctggaaagcaaagtgcggcggcaggatattctggtcgatgagcagcag
atattcgaattctatgctgcacgtattccagcgggtatctatagcggcactgcgtttgaa
aaatggcgtaagcaggcggaacagactgaacccgagctcctgtatctgacgcgggaagta
ttgatacgtcaggcagtagacggaacggctgccgaacagtttcccgagaccctgacagca
gccggccacgtattgcccctgagttaccgtttcgatcctggccatccactggatggggtg
accgttacggtaccgctaccgctgctcaatcagatcatgccgtttcacttcgaccggctg
gtgccggggctcattcgggaaaagatcggctggtacgtgaaaatgctgcccaagcaggtg
cgccgtcacgctattccggtaccgcaattcgttacccggtttctggaatggctggatagt
tgcccggatcaggccatgttgcttgctgagtctctcactgcattcatccgcagcgaaact
ggaatcaaagtaccgctggatacctgggatagcaggttgctgccggtacatttgcagatg
aatgtgaaagtgatcgatgatgccgggatgacgctgggcatggggcatgatctgatcgag
ctgaaggcacaatttggtcagacagcacagcagttgtttgcacgtggcgccggcgcagag
cctgattccattgaacgtgatgacattacccgatgggatttcggagaattaccagtggaa
acccgtttcagccgagccggcaagttgctgaccggttatccggcgctggttgatcaggaa
caaagcgttgccgttcgtatatttgatacgcaggaaggcgcgcagcgcagtatgcgtgga
ggggtgctgcgtttattgtgtctggcactcaaggaccggatcaaacaactggagaaaaat
ctgccggtcgatcgacaagcgattctgctcatgagcagcctgatcgaaatggacagactg
aaggaagatattcgttcggccatcatcgatctggcgctgatcggtgatgatcccttaccg
cgtaacgaggatgaattcaattcacagacgtcacgtgcccgaacacgcctgggatccgtt
tcacaggagatagccgggctgatccataccatcgcccaaccctgccaggaactgaaaaaa
cgactatccgttctggacaaatcagccgttttcctgaaaaaggatatggaggagcaactc
caccacctgatttatccgggatttctaagtacgacccgctggcaatatctgcaacacctt
ccccgttatctcaaaggcatgatcctgcgcctcgataagtacaacaagaatccggcacgt
gatcaggaacagacagaaatcatcagtacattgtggaatcagtacattcagcgcctgaac
aagcaccgccaggccggagtaatagatccgaatatggaaatattccgctggcagatcgag
gaattgcgcatttccctgttcagccaggaactgaaaaccccggcgcctgtttcagtgaaa
cgtctgcaaaaactgtgggaaagcgtgcgggagtga
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