Nitrosomonas europaea: NE2045
Help
Entry
NE2045 CDS
T00130
Symbol
rpoC
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
neu
Nitrosomonas europaea
Pathway
neu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
neu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NE2045 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
neu03021
]
NE2045 (rpoC)
03400 DNA repair and recombination proteins [BR:
neu03400
]
NE2045 (rpoC)
Enzymes [BR:
neu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NE2045 (rpoC)
Transcription machinery [BR:
neu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NE2045 (rpoC)
DNA repair and recombination proteins [BR:
neu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NE2045 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
NAGPA
Motif
Other DBs
NCBI-ProteinID:
CAD85956
UniProt:
Q82T76
LinkDB
All DBs
Position
complement(2215733..2219947)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKALLDLFKQVTQKEEFDSIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSRIRRERMGHIELASPVAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLNRGQLLTEDDYLNKTEEFGDDFSAVM
GAEGIRTLLSNMDIPLEIESLRLEIQTTGSETKIKKAAKRLKVLEAFNKSGMKPEWMILT
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIIRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFNKLETMGVASTIKAAKREVENESPIVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEC
RTLMLSTNNVLSPANGDPIIVPSQDIVLGLYYMTRKKIGAQGEGMVFSDISEVVRAYENK
VVELNAGIIVRIKERKKSRSHGEEPVEAITRYETTVGRALISEILPAGLPFSIINKVLKK
KEISKLINASFRLCGLRETVIFADKLMYSGFSYATRGGISICLDDLVTPSQKNDIIHAAE
QEVHEIANQYISGLVTQGERYNKVVDIWGRAGDQVAKAMMDQLSVEPVTDRETGQVRADK
NGQVVTQESFNSIYMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPITANFREGLNI
LQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITEDDCDTDGGVIMKALVEGG
DVIESLRERILGRVAATDIVNPETGAVIYAAGMLLDEDAVDEIETCGIDEVKVRTPLTCE
TRYGLCAKCYGRDLGRGMLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTVVANQ
VESKSNGVIRYSHHIRYVKNAQNELIVISRSGEVYIQDENGRERERHKIPYGATLLVQDG
EVIKAGQILASWEPHKRPIIAEYAGKVRFENVEEGVTVVRQIDEITGLATLVVIDPKRRN
VAQSKGLRPLVKFLDENDNEINIPGSDQPVSITFHVGSIITVRDGQQVNIGEVLARIPQE
TSKTRDITGGLPRVAELFEARVPKDVGFLAEATGTVAFGKDTKGKQRLVITDLDGVAHEY
LIPKDKHVTAHDGQVVNKGEVIVDGPIDPHDILRLQGVEALARYISNEVQDVYRLQGVRI
NDKHIEVIVRQMLRRVQIMNAGDSSFIPGEQVERAEVLTENEKLIAENKMPATYEYVLLG
ITKASLSTDSFISAASFQETTRVLTEASIMGKKDDLRGLKENVIVGRLIPAGTGLSFHNI
RKKQRLSESAAYLDTDLTENEVTE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagcactgcttgatttattcaaacaagttacacaaaaagaagaatttgattccata
aaaataggtttggcttctcctgaaaaaattcgttcatggtcatacggggaagtgaaaaag
cctgaaacaatcaattaccggaccttcaaacccgagagagatggtttattttgtgccaaa
atttttggtccggtcaaagattatgaatgtttatgcggtaagtataaacggctcaagcac
cggggcgtgatatgtgagaaatgtggtgtggaggttactttatccagaatcagacgtgag
cggatggggcatattgaattggcttcacccgttgctcatatatggtttttgaaatcattg
ccttcgcgtctaggtctcgttctggatatgacgttacgagatatcgaacgagttctgtat
tttgaagcttatgtcgttaccgatcccggcatgactccgctgaatcgtggtcaacttctg
acagaagacgactacctgaataaaacagaagaatttggggatgatttcagtgctgtgatg
ggcgcagaaggtatccgtaccctgctaagcaacatggatattccattggaaattgaatcc
ttacgtttggaaatccagacgactggttcagaaaccaaaatcaagaaagccgccaagcgg
ctcaaggtgctcgaagcattcaataaatccggtatgaagccggaatggatgatactgacg
gtattgcctgtgcttccgcctgagctgagaccattggttccattggatggaggtcgtttt
gcaacctctgatctcaatgatttgtacaggcgtgttatcaaccgcaataatcgtttgaag
cggttgctggaactgcgggcaccggaaattatcattcgtaacgaaaaacgtatgttgcag
gaatcggtggattcgttgcttgataacggccgccgaggaaaagcaatgaccggggccaat
aagcggcccttgaaatcacttgcagatatgatcaagggtaagggtggtcgttttcgccag
aacctgctgggtaagcgagtagactattccggccgatccgtaatcgtggtgggtccgcaa
ctcaagcttcatcagtgcggtttaccgaaaaaaatggcactggagttattcaaaccattt
attttcaataaattggaaacgatgggggttgcaagtacgatcaaagctgccaagagggaa
gttgagaacgaaagtccaatcgtatgggatatcctggaggaagttatccgtgaacatcct
gtaatgcttaatcgtgcccctaccttacatcgactcggtattcaagcgtttgagcctatc
ctggtcgaaggaaaggcgatccagttacatccgctcgtatgtgctgctttcaatgccgac
tttgacggtgatcagatggctgtacacgttcctttgtcgctcgaagctcagatggaatgc
cgtacgctgatgttatcgaccaataacgtcctttcaccagctaatggtgatccaatcatt
gttccttctcaggatattgtgctgggtctttattacatgacccgcaagaagataggtgct
cagggagagggaatggttttctcggatatttcggaagttgtgcgtgcttacgaaaataag
gttgtggagctgaatgccggaattatcgtcagaatcaaggaaagaaaaaaatctcgttca
catggcgaagagcctgttgaagcaataacacgttatgaaaccaccgttggtcgagcactt
atttctgaaattttgccagcaggacttcctttttccataatcaacaaggtactcaagaaa
aaggaaatttcgaagcttatcaatgcgagtttccgtttatgtggtttacgggaaaccgtt
atatttgctgataagcttatgtactctggtttttcctatgctactcgtggtggtatttcc
atctgtttggatgatcttgttaccccatcgcaaaaaaatgacattatccatgctgctgag
caggaagtgcatgaaattgcaaatcagtatatatccggtctggtgacacaaggagagcgt
tacaacaaggttgtagatatatggggtcgagccggtgatcaggtagctaaggcgatgatg
gatcagctgagtgtcgagccggttacagatcgtgaaaccggacaggtcagagccgataag
aatggtcaggttgttactcaggaatcattcaactcaatttacatgatggcggattcgggt
gctcgaggatctgctgcacaaattcgtcagctttccggtatgcgtggtcttatggcgaag
cccgatggttctatcattgaaacaccgattacagccaatttccgtgaaggcctcaacatt
cttcaatattttatttcgacacatggtgcaaggaagggattggccgatacagcgctcaag
actgcaaattcagggtacctcactcgtcgtctggttgatgtgactcaggatctagttatc
acagaagatgattgtgatacagatggtggcgtaataatgaaggcgctggtggaaggtggt
gatgtcattgagtctttacgagagcgtatattgggtcgtgtggctgcgacagatattgtg
aatccggaaactggtgcagtcatttatgcggcgggtatgttgctggatgaagatgcggtt
gacgagatcgaaacttgtggtatcgatgaagtaaaagtaaggacaccactcacttgtgaa
acccgatatgggttgtgtgcaaaatgctatgggcgcgatctgggtcgaggaatgctcgtc
aatgttggagaggcagtaggagtaatcgctgctcaatcgattggtgagccgggtacacag
ttgaccatgcggaccttccatattggtggtgcggcttcaagaacagttgtggctaatcag
gttgaaagtaaatccaacggggttattcgttactctcatcatattcgttatgtgaaaaat
gcccagaatgagctgatagtcatttcacgcagtggtgaagtttatattcaggatgaaaat
ggtcgtgaacgtgagcggcataaaattccttatggtgcaacattacttgttcaggatggt
gaagtaatcaaggcaggacagattctggcatcatgggaaccacacaaacgtccgatcata
gcggaatatgcgggtaaggtacgttttgagaatgttgaagaaggtgtaacagtcgtcagg
caaatcgatgaaataaccggcctggcaactctggtggttatcgaccccaaacggcgcaat
gttgcgcaatctaagggattacggccacttgtcaaattcctggatgagaatgacaatgaa
atcaatatccctggaagtgaccagcctgtcagtattacattccacgtcggatcgattatt
acggtacgggacggacagcaggtgaacatcggtgaggttctggcgcgtattcctcaagag
acatccaaaactcgtgacattacgggtggtttaccccgtgtggctgaactgtttgaagcc
agagtgccgaaagatgtgggttttctggcagaagccaccggtacagttgctttcgggaag
gataccaaaggaaagcaacgactggtcattactgatctcgacggggttgcgcatgaatat
cttattcccaaggataagcatgtgacagcacatgatggacaagtcgtaaataaaggagaa
gtgatcgttgatgggccgatcgatccccacgatatattgcggttgcaaggtgtcgaggca
ttagcccggtatatcagtaacgaagtacaggatgtttaccgcttacagggggtgcgtatc
aatgataagcatatcgaggtgattgttcgtcagatgctgcgccgagttcagataatgaat
gcgggtgactcaagtttcattccgggcgagcaagtcgagcgggcagaagtacttactgag
aacgagaagctcatcgccgaaaacaagatgcctgccacctatgaatatgtactactaggt
ataaccaaggcatcgctttctacagattcatttatttctgcggcttccttccaggaaaca
acccgggttctgaccgaagcatccatcatgggtaagaaggatgatttacgtggtttgaaa
gaaaatgtgattgtgggtagattaataccggcaggaaccgggctgtcttttcacaatatc
cggaaaaaacagagattatcggagagcgctgcttacctggatactgatttaacggagaat
gaagtgacggaatga
DBGET
integrated database retrieval system
