Candidatus Nitrososphaera evergladensis: NTE_01342
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Entry
NTE_01342 CDS
T03224
Name
(GenBank) ribosomal RNA-processing protein RRP4
KO
K03679
exosome complex component RRP4
Organism
nev
Candidatus Nitrososphaera evergladensis
Pathway
nev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTE_01342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nev03019
]
NTE_01342
Messenger RNA biogenesis [BR:
nev03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NTE_01342
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NTE_01342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
RRP40_S1
RRP4_S1
KH_2
KH-I_KHDC4-BBP
KH_KRR1_2nd
ECR1_N_2
KH_6
Motif
Other DBs
NCBI-ProteinID:
AIF83410
UniProt:
A0A075MQP4
LinkDB
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Position
1119441..1120274
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AA seq
277 aa
AA seq
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MNDVRRRYVIPGDKIVEGNYRPIMNVVRSGNALIATRIGIAEAGRDGVKVIPLSGVYIPR
VNDLVIGKIVDHTSLSWEVDINSCFSANLPASDVFGRDFSPARDDMTKHLAIGDMITARV
AAFDRTRDPMLTLQDRDLGKIPRGELLKISATRVPRLIGKRGSMIQTIEQATQTRVLIGQ
NGIVVVTGRSPEGIEQAVKAIRMVEDEAHTANLTQRIKVLLNVPDTPAAAEEAPPASSNG
GSSGGGAPIPPPQQEATRADSSSETQQGKEMEVPDEK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgtgcgcagaagatatgttatccccggcgacaagatagtcgagggcaattac
aggccgataatgaacgttgtaaggtcgggaaacgcgctgatagcaacccgcattggcatt
gcagaggcgggccgcgacggcgtcaaggtgataccgctgtcaggagtctacatcccccgc
gtaaacgaccttgtgataggcaagatagtagaccacacctcgctttcatgggaggtggac
atcaactcatgcttctcggctaaccttcctgcatccgacgtctttggcagggacttttcg
cctgcaagggacgacatgacaaagcaccttgcgataggcgacatgataacggcccgagtc
gcggcctttgacaggacgcgcgacccgatgctgaccctgcaggaccgcgaccttggcaag
ataccaaggggcgagctgctaaagatatcagcgacaagggtcccgcgcctgataggcaag
cggggctcgatgatccagacgatagagcaggcgacgcagactcgcgtgctcatcggccag
aacggcatcgtggtcgtgacgggaagaagcccagaaggcatagagcaggcggtaaaggct
ataaggatggtagaagacgaagcccacacggccaacctgacgcagaggatcaaggtcctc
ctcaacgtgccggacacgccggcagcagcagaagaggcgccgcccgcaagtagcaacggt
ggcagtagtggtgggggggctccgataccgccgccgcagcaggaagcaacccgcgcggat
tcttcaagtgaaacacaacaaggaaaagaaatggaggttccagatgaaaaatga
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