Candidatus Nitrososphaera evergladensis: NTE_01344
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Entry
NTE_01344 CDS
T03224
Name
(GenBank) ribosomal RNA-processing protein RRP42
KO
K12589
exosome complex component RRP42
Organism
nev
Candidatus Nitrososphaera evergladensis
Pathway
nev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTE_01344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nev03019
]
NTE_01344
Messenger RNA biogenesis [BR:
nev03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NTE_01344
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
NTE_01344
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AIF83412
UniProt:
A0A075MRH4
LinkDB
All DBs
Position
1121008..1121832
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AA seq
274 aa
AA seq
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MSTSKRSSIIVEHLRKQQMLDMMAKGKRIDGRAFDEQRPLEIETDVIKKANGSARVKLGN
SEVIAGVKVETGEPFEGLENKGALIVSAEVLPTASPHVEPGPPDEEVIELARVVDRGVRE
SEMVDLEKLVLVEGKVVYTIFVDCSVLNADGNLFDATSYATVAAILTAKIPVLEMQEGKV
VDTGKTIPMPVTTVPISITQVRIGDAILVDPTAEEEGAMDARITITTSDEGYCALQKGYT
GSFTIEQIKKAGETARIKGEEVRAKIKEITNYGT
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatcaaaacgttcctcgataatagtggagcacctgcgcaagcagcagatgctt
gacatgatggcaaagggcaagaggattgacggccgcgcgtttgacgagcagaggccgcta
gagatagagacggacgtgataaagaaggcaaacgggtcagcccgcgtaaagctgggcaac
tctgaggtgatagcaggcgtcaaggtggagactggcgagccgtttgagggacttgagaac
aagggcgccctcatcgtgtcagccgaggtcctgccgaccgcgtcgccgcacgtggagccg
ggccctccagacgaggaggtgatagagcttgcacgcgtggttgacaggggggtgcgggaa
tccgagatggtcgaccttgaaaagctggtgcttgtagagggcaaggtcgtctacacgata
ttcgtggactgcagcgtgctaaacgccgacggcaacctctttgacgcaacgtcgtacgcg
actgttgcagcaatcctgacggccaagatacccgtccttgaaatgcaggagggcaaggtg
gtagacacgggcaagactattccgatgcccgttacaacggtccccatctccatcacgcag
gtcagaataggcgatgccatactggtcgacccgactgcagaagaagagggcgcgatggac
gcgaggataaccataacgacgtcggacgagggctattgcgcgctgcaaaaaggctacacg
ggctcgtttacgatagagcagataaagaaggcgggcgagacagcaagaattaaaggagag
gaagtccgcgccaagataaaggagataacgaattatggcacgtaa
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