Candidatus Nitrososphaera evergladensis: NTE_03297
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Entry
NTE_03297 CDS
T03224
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nev
Candidatus Nitrososphaera evergladensis
Pathway
nev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTE_03297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nev03019
]
NTE_03297
03009 Ribosome biogenesis [BR:
nev03009
]
NTE_03297
Enzymes [BR:
nev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NTE_03297
Messenger RNA biogenesis [BR:
nev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NTE_03297
Ribosome biogenesis [BR:
nev03009
]
Prokaryotic type
rRNA helicases
NTE_03297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Flavi_DEAD
adh_short
ERCC3_RAD25_C
P-loop_SecA
Utp25_C
Peptidase_M66
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIF85326
UniProt:
A0A075MUI6
LinkDB
All DBs
Position
2735433..2736821
Genome browser
AA seq
462 aa
AA seq
DB search
MTKTFAELGLSAELNKALSENGFEAPFPIQEAAIPLVLQGKDVIGQAHTGTGKTAAFGLP
ILARVSNEGPVQALVLVPTRELAVQVTTEISRLAKYTGIKTVAIYGGQSINIQNEKLQRG
VQIVVATPGRLIDHIKQGSIILDDVKFVVLDEADRMLDMGFIDDIKFILFYVNEDRQTCL
FSATMPPEILRLAEEYMKEIEHVRLNEEEVTLDTIEQSYLVVEEREKFRHLCDFIKKNRD
AKAQTIVFAATKQRADRVAHQLKRDGFSAIAIHGDLTQRQRDQAMFKFRKGTEDILVATD
IAARGIDVPAVGNVINYDIPDDPNVYFHRIGRTARAGAEGKAISLVSAERIADMECILAQ
TTLPIRKLNDEMGIAVPVAQPRSYGGGGYRGRQSYGGGGYGSRGYGGGGYGSSGYGSRGY
GNSRGGGYGGGGRRGYGQRRGGYGGSRRGGGYGRSSNYGGRY
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagacgtttgcagaattgggtctgagcgcggaattaaacaaggcgctcagcgag
aatggatttgaggcgccgtttcctatacaggaggcagctataccccttgttttgcagggt
aaggatgtcatagggcaggcgcacacaggaaccggcaagacggcagcatttggactgccc
atactggcccgcgtaagcaacgagggccccgtccaggcgctggtgcttgtgccgacaagg
gagcttgcggtgcaggtaactacagagattagccggttggccaagtacacgggaataaag
accgtagccatctacggcggacagagcataaacatccagaacgagaaattgcagagaggc
gtgcagattgtagtagcgacgcccggcaggcttatcgaccacataaagcagggctcgata
atccttgacgacgtcaagtttgtcgtcctggacgaggctgacaggatgcttgatatggga
ttcatcgacgacatcaagttcatcctgttctacgtcaacgaggacaggcagacatgtttg
ttctctgcgacgatgccgccggagatcctcaggctggcagaggagtacatgaaggagata
gagcacgtacggctcaacgaggaggaagtaaccctcgatacgatagagcagtcgtacctg
gtggtagaggagcgtgaaaagttcaggcacctctgcgactttatcaaaaagaacagggac
gccaaggcgcagaccatagtgtttgccgctacaaagcagcgcgcagacagggttgcgcac
cagctaaagcgcgacggcttttccgcaatagccatccacggcgacctcacgcagaggcag
cgcgaccaggcgatgttcaagttccgcaagggcaccgaggacatccttgttgctaccgac
atcgctgcaaggggaatcgacgtgccggcggtcggaaacgtcatcaactatgacatcccc
gacgatcccaacgtgtacttccacagaataggaaggacggcaagggcgggcgcagagggc
aaggccatctcgctcgtttcagccgagaggatagccgacatggagtgcatacttgcgcag
accacgcttccaatacgcaagctcaacgacgagatgggcatcgcagtccctgttgcgcag
ccacgctcgtacggcggaggaggataccgcggaaggcagtcatatggcggtggaggttat
ggaagccgcggctatggcggtggcgggtacggcagtagtggatacggaagcaggggctat
ggcaatagtcgcggaggaggctatggcggcggaggaaggcgcgggtacgggcagcgccgg
ggcggctatggcggcagcagacgcggcggcgggtacggccgtagcagcaactacggcgga
agatactga
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